Query= MSMg01no501_a06.b1 MSMg01no501_a06.b1 CHROMAT_FILE:
MSMg01no501_a06.b1 PHD_FILE: MSMg01no501_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:46 2005
(650 letters)
>mm_chr2_140474768_140475817
Length = 1050
Score = 1147 bits (593), Expect = 0.0
Identities = 637/663 (96%), Gaps = 19/663 (2%)
Strand = Plus / Plus
Query: 7 gaattcttcatcctgtacttctttattgttaagggtagtgtagttattgaatatgcatga 66
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattcttcatcctgcatttctttattgttaagggtagtgtagttattgaatatgcatga 254
Query: 67 atgtctcaccttttgctgagtggttatgctttgtgtcactgcgcatgacatgttccacat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atgtctcaccttttgctgagtggttatgctttgtgtcactgcgcatgacatgttccacat 314
Query: 127 gtgctttatcacagtaagtttccccccttaacgttaagatgatttatcaacttacttcca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gtgctttatcacagtaagtttccccccttaacgttaagatgatttatcaacttacttcca 374
Query: 187 cgtatttattaacaacccagtttgaaccatgcctccgtgtccttatccccaaatacagtg 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 375 cgtatttattaacaacccagtttgaaccatgcctccgtgtccttatccccaaatgcagtg 434
Query: 247 aagggttagttgctttactggctctcctgtcgcatctcattctgggacttctaaggaaag 306
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 435 aagggttagttgctttactggctctcctgtcgcatctcagtctgggacttctaaggaaag 494
Query: 307 gtg------------caaatgtgcaattcatctgtagagatgaaaatgcttaatgtgctt 354
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gtgaaactgtaggtacaaatgtgcaattcatctgtagagatgaaaatgcttaatgtgctt 554
Query: 355 gtgaatcaatgcatctctcctagcaagattagtgcactctgataaatagtgaaacctaat 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gtgaatcaatgcatctctcctagcaagattagtgcactctgataaatagtgaaacctaat 614
Query: 415 cttcactcataggctaatctttttaaaaatattacttatcatctctagagatttgtgtgt 474
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 615 cttcactcataggctaatctttttaaaagtattacttatcatctctagagatttgtgtgt 674
Query: 475 tctcagtgctgggacagaaagaagtcagggcatcttgctagagaagtgctcctaacactg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tctcagtgctgggacagaaagaagtcagggcatcttgctagagaagtgctcctaacactg 734
Query: 535 agctacatgcccagttctgag-------ctaactaaagtctttgtctggaaaagaccatt 587
|||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 735 agctacattcccagttctgagaaaaatgctaactaaagtctttgtctggaaaagaccatc 794
Query: 588 agcagataaactatgtattagatttaaatatgagcacaaaacaagagattagatccttta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 agcagataaactatgtattagatttaaatatgagcacaaaacaagagattagatccttta 854
Query: 648 cca 650
|||
Sbjct: 855 cca 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_a06.g1 MSMg01no501_a06.g1 CHROMAT_FILE:
MSMg01no501_a06.g1 PHD_FILE: MSMg01no501_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:46 2005
(506 letters)
>mm_chr2_140584790_140585695
Length = 906
Score = 948 bits (490), Expect = 0.0
Identities = 502/506 (99%)
Strand = Plus / Minus
Query: 1 ctcagctctgagaatttgagtcagtctccctccctatctctctcccagtctccttccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ctcagctctgagaatttgagtcagtctccctccctatctctctcccagtctccttccctg 787
Query: 61 actacctacccacttacctacttccgctccccaccccacccccaccccccaccccctatt 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 786 actacctacccacttacctacttcctctccccaccccacccccaccccccaccccctatt 727
Query: 121 cacttccctgcccccctcccattcattcttaactccagatccttgggagtcttggttcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cacttccctgcccccctcccattcattcttaactccagatccttgggagtcttggttcaa 667
Query: 181 actgactttagaggtcctagagtttccaccgctgagacatagcatagctttctctcaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 actgactttagaggtcctagagtttccaccgctgagacatagcatagctttctctcaaat 607
Query: 241 aaagatcctggctattctccgagggaagggtgccagctatgccctcatctgcaaacactt 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aaagatcctggcgattctccgagggaagggtgccagctatgccctcatctgcaaacactt 547
Query: 301 taagatcaatataggcaaagcccttgctatgcaacctgggctacatcatgcctagtgata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 taagatcaatataggcaaagcccttgctatgcaacctgggctacatcatgcctagtgata 487
Query: 361 cttttctggaagagatctgtgaagatgccctcgtgtccacaaagccctgagcacttgggt 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 486 cttttctggaagagatctgtgaaggtgccctcgtgtccacaaagccctgagcacttgggt 427
Query: 421 aaatgctgctgtccccttgggctacccattctgaaagctggcagagcccctccgggtagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaatgctgctgtccccttgggctacccattctgaaagctggcagagcccctccgggtagg 367
Query: 481 tctcccccaagggaggatctggagac 506
||||| ||||||||||||||||||||
Sbjct: 366 tctccaccaagggaggatctggagac 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
