Query= MSMg01no501_b14.b1 MSMg01no501_b14.b1 CHROMAT_FILE:
MSMg01no501_b14.b1 PHD_FILE: MSMg01no501_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:52 2005
(579 letters)
>mm_chr2_130436460_130437438
Length = 979
Score = 946 bits (489), Expect = 0.0
Identities = 504/509 (99%)
Strand = Plus / Minus
Query: 1 tgaggacagaagaaaaaaatttgtccctccccagagtatagctgtggatgctcagtcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgaggacagaagaaaaaaatttgtccctccccagagtatagctgtggatgctcagtcata 450
Query: 61 cctccgagacccgaggagtccagtcagtgtttaattacctacctcagctttaaacacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cctccgagacccgaggagtccagtcagtgtttaattacctacctcagctttaaacacaaa 390
Query: 121 aaaggaaaaaatccccaacataactgtccactgtttaacttctgtgtgctcgccataact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaaggaaaaaatccccaacataactgtccactgtttaacttctgtgtgctcgccataact 330
Query: 181 ttccaaactgcatgtgcattcctaggtggaggggttttgtttctgtggtgctgggcatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttccaaactgcatgtgcattcctaggtggaggggttttgtttctgtggtgctgggcatga 270
Query: 241 aactatggcctgtggatttgaggcagacgttcaacacaatccctaccttttttgtttttg 300
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaccaaggcctgtggatttgaggcagacgttcaacacaatccctaccttttttgtttttg 210
Query: 301 ggttttttgtttgtttttttgaggcagcctcgctgtgtaacccgttctggcctgaactct 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ggttttttgtttgttttttttaggcagcctcgctgtgtaacccgttctggcctgaactct 150
Query: 361 aaattgtcctgcttcagttccccaagttgtccttcagcctccatacatgctttggtgtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aaattgtcctgcttcagttccccaagttgtccttcagcctccatacatgctttggtgtgt 90
Query: 421 atgcctgtttatgtgactgcctgtaaatattttaaagttggtgacagccctagtagatca 480
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 89 atgcctgtttatgtgactgcctataaatattttaaagttggtgacagccctagtagatct 30
Query: 481 tacctgtaatactagcagttggtaggtga 509
|||||||||||||||||||||||||||||
Sbjct: 29 tacctgtaatactagcagttggtaggtga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_b14.g1 MSMg01no501_b14.g1 CHROMAT_FILE:
MSMg01no501_b14.g1 PHD_FILE: MSMg01no501_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:53 2005
(611 letters)
>mm_chr2_130278282_130279292
Length = 1011
Score = 1120 bits (579), Expect = 0.0
Identities = 602/611 (98%), Gaps = 3/611 (0%)
Strand = Plus / Plus
Query: 1 ttactcggtttgggaaaagacaaagcatcggagaggtaaattctagcagtctaaaggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ttactcggtttgggaaaagacaaagcatcggagaggtaaattctagcagtcaaaaggaaa 260
Query: 61 tgtagagaaagaaaatccattctcttatctcctaacaccttcccaaggatggctgaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtagagaaagaaaatccattctcttatctcctaacaccttcccaaggatggctgaagtt 320
Query: 121 gctagcatctgtggccttttataaaccctccttctttataacattcatctacaaccccct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gctagcatctgtggccttttataaaccctccttctttataacattcatctactcccccct 380
Query: 181 ctggccataccagtcacaccttacttcttaaatgagcacatgtttaggaaatcactctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggccataccagtcacaccttacttcttaaatgagcacatgtttaggaaatcactctgt 440
Query: 241 gttagcataatgtattgtttactctttgtgttgacatttcttttaaaaaactttttttta 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttagcataaagtattgtttactctttgtgttgacatttcttttaaaaaactttttttta 500
Query: 301 aattaaaagatgtatgtgtgtggttattttgcctatatgtatgtctgtgtacgacttgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattaaaagatgtatgtgtgtggttattttgcctatatgtatgtctgtgtacgacttgtg 560
Query: 361 ggccaggtgcccttggaggccagaaaagctggtggagacccatgaattagaattatagac 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 ggccaggtgcccttggaggccagaaaagctggtggagacccatgaactagaattatagac 620
Query: 421 cactgtgatctgccatgtgggtgcagaggattgaactcaggtcttctggaagaacaacca 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ---tgtgatctgccatgtgggtgcagaggattgaactcaggtcttctggaagaacaacca 677
Query: 481 gtgttgacatttcttattttgttatacagctctaaagtaagctgtttttatctgtacata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtgttgacatttcttattttgttatacagctctaaagtaagctgtttttatctgtacata 737
Query: 541 ggactgttacatgtgtttgtaactagtctttaattgagttaaacatttgtttctaggttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 738 ggactgttacatgtgtttgtaactagtctttaattgagttaaacatttgttcctaggttt 797
Query: 601 ttctcttataa 611
|||||||||||
Sbjct: 798 ttctcttataa 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
