BAC Information

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BAC

Clone NameMSMg01-501H02
Chromosome2 (Build37)
Map Location 111,379,229 - 111,379,580
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294
Downstream geneOlfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501H02.T7 (MSMg01no501_h02.b1)MSMg01-501H02.TJ (MSMg01no501_h02.g1)
ACCAG577037AG577038
length727724
length of high quality
(start - end)		350 (319 - 668)652 (60 - 711)
definitionCHROMAT_FILE: MSMg01no501_h02.b1 PHD_FILE: MSMg01no501_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:17 2005CHROMAT_FILE: MSMg01no501_h02.g1 PHD_FILE: MSMg01no501_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATTCTGCCA
TCTCCCGTCAGCTAGAAAAAAGAAGAAATAGTCTCACGAGGGATGAGCTT
CCTTATTTGTTGGCAGTGCCCAGTTGTCAGCTCTGAAAGCATATGCAGCA
ACAAAAAATGGACTCAACAGATTGTATTTATACTCATTTTTCATACATCT
AATATAACACCCATATATGTAGCAAAAAGAATCAAGGGGAAACAGGCTAG
TCACTTGATAAGTATCATGGGAAAAATATGAGGAGGTTCTTGGGAGCAAT
TTCAGGAAGGAAATTGTAATTGGGTAAATGATAGAATTCTACGTACATTA
AAAATATATATAAAAGTGAAACATACATACTACCAACAACCCTAACGAAA
ACACACAACAACAAAACACAACACAACAATCAATCTGTGAGCAAAGCAAG
CTATTAGAAGCTGTTAGGTGCCCTTCCATCATCAATGTCTATCACATGGT
GTCTTTTTAAGTTGTATAATTTTCATTACACTTGGAAATCCTTACAGAAT
CAAAATACTGAGACTATTACAAAGTTTATGACTTTATACAAGGGCACTCA
ATATAGGAAAAAAAAAGCATTGAAAACTAGGANAAAATTATTATTTCTCT
TTTAGACTCTAAAATAGATTATTCAATTTGTATCTGTTCATTCATTTTTA
TAATTATTATGTGTAAGCCAACCTTAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAAGGCCCATACCTAAACACAATAAAAGGAATTTATTGCAAA
CCAACAGCCAATAAAATTAAATGGAGAGATACTTAAAGCAATCCTACTAA
AATTGGGGACAAGAAAAGGATGTCCACTTTCAACATATCTATTCAATAAC
TCAAAGTGCTAGGTAGAACAATAAGACAACAAAAAGGGATCAAGGGGACA
CAAATTGACGAAAAAGAAATAAAGGTATCACTGTTTGCAGGTGATATGAT
AGTATACAAAATTGACCCCAAAAGTTCTACCAGAGAACTTCTCCAACTGA
TAAACAACTTCAGCAAAATGGTGGGATAAAAAATTAACTCAAATATATCA
GTAGCCTTCCTTTATACAAATGATAAACAGGCTGAGAAAGAATTTAGGGA
AACAATTCCCTTCACAATATCTATAAATAATATAAAATATCTTGGGTGAC
TCCAACCAAACAACTGAAAGATGCATCACAATAACACTAAGTTTCTTAAG
AAAGAAATTGAAGATCTCAGAAAATGAAGAGCTCTCCCATGCTCATGAAT
TGGCAGAATTAACATAGTAGACATGGCCAACCTACCAAAGGCAATCTACA
GATACAATGCAATTCCCATAAAAATCCCAACACAATTTTTCAAAGGCATG
GAAAGAGAAGTTCTCAAATTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_h02.b1 MSMg01no501_h02.b1 CHROMAT_FILE:
MSMg01no501_h02.b1 PHD_FILE: MSMg01no501_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:17 2005
         (350 letters)



>mm_chr2_111379029_111379780
          Length = 752

 Score =  659 bits (341), Expect = 0.0
 Identities = 349/352 (99%), Gaps = 2/352 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgggtaaatgatagaattctacgtacattaaaaatatatataaaagtgaaacatacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 attgggtaaatgatagaattctacgtacattaaaaatatatataaaagtgaaacatacat 493

                                                                       
Query: 61  actaccaacaaccctaacgaaaacacacaacaacaaaacacaacacaacaatcaatctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 actaccaacaaccctaacgaaaacacacaacaacaaaacacaacacaacaatcaatctgt 433

                                                                       
Query: 121 gagcaaagcaagctattagaagctgttaggtgcccttccatcatcaatgtctatcacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gagcaaagcaagctattagaagctgttaggtgcccttccatcatcaatgtctatcacatg 373

                                                                       
Query: 181 gtgtctttttaagttgtataattttcattacacttggaaatccttacagaatcaaaatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtgtctttttaagttgtataattttcattacacttggaaatccttacagaatcaaaatac 313

                                                                       
Query: 241 tgagactattacaaagtttatgactttatacaagggcactcaatatagg-aaaaaaaaag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 312 tgagactattacaaagtttatgactttatacaagggcactcaatataggaaaaaaaaaag 253

                                                               
Query: 300 cattgaaaactagg-anaaaattattatttctcttttagactctaaaataga 350
           |||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 252 cattgaaaactaggaaaaaaattattatttctcttttagactctaaaataga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 752
Length adjustment: 9
Effective length of query: 341
Effective length of database: 743
Effective search space:   253363
Effective search space used:   253363
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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