BAC Information

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BAC

Clone NameMSMg01-501H10
Chromosome2 (Build37)
Map Location 125,860,865 - 125,861,508
singlet/doubletsinglet
Overlap geneFgf7
Upstream geneSlc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2
Downstream geneDtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501H10.T7 (MSMg01no501_h10.b1)MSMg01-501H10.TJ (MSMg01no501_h10.g1)
ACCAG577053AG577054
length722705
length of high quality
(start - end)		644 (61 - 704)620 (55 - 674)
definitionCHROMAT_FILE: MSMg01no501_h10.b1 PHD_FILE: MSMg01no501_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:18 2005CHROMAT_FILE: MSMg01no501_h10.g1 PHD_FILE: MSMg01no501_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCCAGG
GAATCCCCTTCAACTTTGTCGATAGAGGCTGTAAAACTTGATTTAACTCA
ATAACTGTGAGTACACAGTGTTTCCTGACAAGATAGCAACTGGAATGAAT
GGTGTGGTTTTCTTGTGGTGTCTCCTCACTAACGCATAGCGCTTCTGAAT
CTATGTGCAGAGTGGCAGAGATGCTCACGTCCTCTGTGGGAGCTGTTTTA
AACGTGCTTTCAACATTTAAGTACACTGACATGTTAGACTATCTAACTAC
TGAAATTTATACATACAATTTTTTTTATCTCCCTCTCCTCTCCCCCTCCC
CATTCCTAATCTCTCTCTTCGAGCAGAAGTCAAGGAGCAACCGCACTGCA
GCAACTGGCCTTGTCACGACCTGTTTCTATAAGGATATACCTATCAGCTG
TGTTCCTGAAGGAGGAATCGTGTTATTGGTATCAGAAGCTAAAAGATAAG
GTTAACAGTTTGGAAAGAGCGACGACTTTTTCTCTCATCAATCTCCAGTT
CACAAATAGGAGGAGGCCCATGACCTAGGAGTAGCAATCAACGCAAGATT
CAATTCTCATTATGTTATTCATGAACACCCGGGGCACTACACTATAATGC
GCAAATGGATACTGACACGGATCCTGCCAACTCTGCTCTACAGGTCATGC
TTCCACCTCGTCTGTCTAGTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAG
AATTCTGTCTTGTTATGTACCCCATATTTTTAAATGGGATATTTGAATAT
TTGGTGTTTAACTTCTTGAGTTCTTTATAAATGTTGGCAGTTAGCCCTTT
GTGAGATGTAAGGTTGGTGAAGATCTTTTCCCAATCTGTAGACTGCCATT
TTATTTTATTTTATTTTACTTTATTGACAGTGTCCTTTGCCTTACAGAAG
CCTTGCAGTTTCATGAAGTCCCATTTATCAATAGTTAATCTTAAGAGTAT
GTGTCATTAGTATTCTGTTCAGAAAACTGTGCCTGTACCAATGGCTTGAA
GGATATTTTCCACTTTCTATTCCATGAGATTTATGTTGAGGTCCTTGATC
CACTGGACTTGAGTTTTGTGCAGGTTGATAAATACGGATCTATTTTCACC
CCTCTACATGTAGACATCCAATTAGATAGACCAGCCCCATTTGTTGAAGA
TGCTTTCTTTTTCCCATTATATGGTTTGGCTTCTTTATCAAAGTATCCAT
AAGTATATGGGTTTATTTCTGAGTCTTTAATTCTATTCCATTGGTCGACC
TGTCAGTTTCTATACCAATACTATGCAGTTTTTGTCACTATTGCTCTGTA
GTACATCTTGAGGCACTTTATTGTTCAAGATTGTTTTGACTATCCTGGGT
TTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_h10.b1 MSMg01no501_h10.b1 CHROMAT_FILE:
MSMg01no501_h10.b1 PHD_FILE: MSMg01no501_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:18 2005
         (644 letters)



>mm_chr2_125860665_125861708
          Length = 1044

 Score = 1222 bits (632), Expect = 0.0
 Identities = 641/644 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactttgtcgatagaggctgtaaaacttgatttaactcaataactgtgagtacacagtg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 caactttgtcgatagaggctgtaaaacttgatttaactcaatagctgtgagtacacagtg 260

                                                                       
Query: 61  tttcctgacaagatagcaactggaatgaatggtgtggttttcttgtggtgtctcctcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcctgacaagatagcaactggaatgaatggtgtggttttcttgtggtgtctcctcact 320

                                                                       
Query: 121 aacgcatagcgcttctgaatctatgtgcagagtggcagagatgctcacgtcctctgtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacgcatagcgcttctgaatctatgtgcagagtggcagagatgctcacgtcctctgtggg 380

                                                                       
Query: 181 agctgttttaaacgtgctttcaacatttaagtacactgacatgttagactatctaactac 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 agctgttttaaacgtgctttcaacatttaactacactgacatgttagactatctaactac 440

                                                                       
Query: 241 tgaaatttatacatacaattttttttatctccctctcctctccccctccccattcctaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaatttatacatacaattttttttatctccctctcctctccccctccccattcctaat 500

                                                                       
Query: 301 ctctctcttcgagcagaagtcaaggagcaaccgcactgcagcaactggccttgtcacgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctctcttcgagcagaagtcaaggagcaaccgcactgcagcaactggccttgtcacgac 560

                                                                       
Query: 361 ctgtttctataaggatatacctatcagctgtgttcctgaaggaggaatcgtgttattggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtttctataaggatatacctatcagctgtgttcctgaaggaggaatcgtgttattggt 620

                                                                       
Query: 421 atcagaagctaaaagataaggttaacagtttggaaagagcgacgactttttctctcatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcagaagctaaaagataaggttaacagtttggaaagagcgacgactttttctctcatca 680

                                                                       
Query: 481 atctccagttcacaaataggaggaggcccatgacctaggagtagcaatcaacgcaagatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctccagttcacaaataggaggaggcccatgacctaggagtagcaatcaacgcaagatt 740

                                                                       
Query: 541 caattctcattatgttattcatgaacacccggggcactacactataatgcgcaaatggat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caattctcattatgttattcatgaacacccggggcactacactataatgcgcaaatggat 800

                                                       
Query: 601 actgacacggatcctgccaactctgctctacaggtcatgcttcc 644
           ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 801 actgacacggatcctgccaactctgctctacagatcatgcttcc 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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