BAC Information

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BAC

Clone NameMSMg01-501J02
Chromosome2 (Build37)
Map Location 78,374,169 - 78,374,610
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703, LOC383717
Downstream geneLOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501J02.T7 (MSMg01no501_j02.b1)MSMg01-501J02.TJ (MSMg01no501_j02.g1)
ACCAG577132AG577133
length721619
length of high quality
(start - end)
657 (33 - 689)61 (161 - 221)
definitionCHROMAT_FILE: MSMg01no501_j02.b1 PHD_FILE: MSMg01no501_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:25 2005CHROMAT_FILE: MSMg01no501_j02.g1 PHD_FILE: MSMg01no501_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCAAATG
TACTTTCTCTAGTACATAAAAGAAGAAAAAATTTTCTATGTAAGTTGCAG
AAGGGTAGCTTCTGCAATCCAGGCATTTCCTGGTGCAATTGTGATCAGAA
TATTCTGGGGTGTGAAGAAGAACCAAGTCCTACAAAGCTTCCGGGACTCG
TCATCTGTAGATTAGTGCCTATCACCGTGATAGAACACCACAACAGAAAA
CAACTTGGGAAAGAAGGGTTTATACTGGCTTACAACTCACAGGTCACTCC
ATCACTGAGAAGAGCAGAGCAGGAGCCTGGAGGCAGGAACTGAAGCAGAG
GCCTTGATCTTCATGCCTTGCTCAACATGCTTGCTTTGTTTTTGTTTTTG
TTTTTGTTTTTGTTTTTGTTTTTGTTTTGGTTTTGGTTTCGGTTTCGGTT
TCGGTTTCGGTTTTGGTTTTTTGAGATAGAGTTTTTCTGTATAGCCCTGG
CTGTCCTGGAACTTACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATC
CACCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCATGCACCACCATT
GTCTGGCTCAACATGCTTTCTTAGACCTGCCTGGAGTTGTCACCATTCCA
AGTGGTCCAGGAACTTCCACATCAATCATCAATCAAGAAAATTCCCCACA
GAGATGCCTATAGGCCAACTN
GGGGNNGGATTTACAACCNNTTTGGTTGTTGCTTCCAACATTCTTTATNN
NNNNNNTTTTTTTTNNNTTTCTTTTTATNNNGCTATGAXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTGATGTTAAAATGCTTATGTTTAAGTAAAATTTATTGTACTTA
ATAATGTCTAATGCACATGAGGTGAAAATATTCAGAAACTAAACTATCCG
AAATGAAGCCATATATTCTTTCTTGTATTAAAAAGGGGGAACGTTCTCTT
TNNNAAATATTATTAAGAAAAACTTTTGCTGAGTTTTCAAAAAAAGTAGC
AAATTTTGGAGGGAATTTACCCATTTCTCCAATTTTTTTACAAAAAATGG
CTTAAACTGGATTTTTAAGGCAGGTAAAAACTTTAACGGGGTTGGTCCAT
AAAAAAACTTTTTTTTAAAAAAAAATTTTTGTTTTAAAATAAAAAAAAAG
CGCACCCCTTTATTTTTTTTTTCCCCCCCCCCGGGGGGGTTTTTTTTTTT
AAACACCCCCCTTTTTTGGGGGGAGATTTTTTTTAAAAAAAAAAAAAACC
CCCCCCTATTAAAATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_j02.b1 MSMg01no501_j02.b1 CHROMAT_FILE:
MSMg01no501_j02.b1 PHD_FILE: MSMg01no501_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:25 2005
         (657 letters)



>mm_chr2_78374169_78375225
          Length = 1057

 Score =  717 bits (371), Expect = 0.0
 Identities = 427/459 (93%), Gaps = 23/459 (5%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcaaatgtactttctctagtacataaaagaagaaaaaattttctatgtaagttgca 67
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||    
Sbjct: 442 gaattcaaatgtacctagtctagtacataaaagaagaaaaaattttctatgtaagt---- 387

                                                                       
Query: 68  gaagggtagcttctgcaatccaggcatttcctggtgcaattgtgatcagaatattctggg 127
                        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 -------------tgcaatccaggcatttcctggtgcaattgtgatcagaatattctggg 340

                                                                       
Query: 128 gtgtgaagaagaaccaagtcctacaaagcttccgggactcgtcatctgtagattagtgcc 187
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 339 gtgtgaagaagaaccaagtcctacaaagcttccgggactcatcatctgtagattagtgcc 280

                                                                       
Query: 188 tatcaccgtgatagaacaccacaacagaaaacaacttgggaaagaagggtttatactggc 247
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tatcaccgtgataaaacaccacaacagaaaacaacttgggaaagaagggtttatactggc 220

                                                                       
Query: 248 ttacaactcacaggtcactccatcactgagaagagcagagcaggagcctggaggcaggaa 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttacaactcacaggtcactccatcactgagaagagcagagcaggagcctggaggcaggaa 160

                                                                       
Query: 308 ctgaagcagaggccttgatcttcatgccttgctcaacatgcttgctttgtttttgttttt 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 159 ctgaagcagaggccttgatcttcatgccttgctcaacatgcttgctttgtttttgttttg 100

                                                                       
Query: 368 gtttttgtttt-----tg-tttttgtttttgttttggttttggtttcggtttcggtttcg 421
           ||||| |||||     || |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 99  gttttggttttggttttggtttttgttttggttttggttttggtttcggtttcggtttcg 40

                                                  
Query: 422 gtttcggttttggttttttgagatagagtttttctgtat 460
           |||||||||||||||||| ||||||||||||||||||||
Sbjct: 39  gtttcggttttggtttttcgagatagagtttttctgtat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)