BAC Information

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BAC

Clone NameMSMg01-501J13
Chromosome2 (Build37)
Map Location 95,293,176 - 95,424,702
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501J13.T7 (MSMg01no501_j13.b1)MSMg01-501J13.TJ (MSMg01no501_j13.g1)
ACCAG577154AG577155
length683696
length of high quality
(start - end)		249 (49 - 297)639 (58 - 696)
definitionCHROMAT_FILE: MSMg01no501_j13.b1 PHD_FILE: MSMg01no501_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:27 2005CHROMAT_FILE: MSMg01no501_j13.g1 PHD_FILE: MSMg01no501_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,424,454 - 95,424,702)(95,293,176 - 95,293,814)
sequence
GACTCCTATTTTCAGAGAATGCGCGGAATTCACAGGTAATTTCAATAATG
GGAAACAAATCATGATGTTTTTACTTTGCCTATGTGAGCTCTAGACGTCC
CTAAGATAATGGAAATCACTCTTTCAGGAACCACCGGTGTCTAAGGATTA
ATCTAAAATTTCACAACAATACTTAATCTTAGGTACATAGTAGAGGTGAC
TATGAGGAAAACTAGTATGTTCCATCCACATTCCCTTTTTCAATAATAAA
TGCCCTGTAAATTTCCATTCCAAATTTCAGTCCTCAAATTGGCTCCCTTA
ATTTCCAATGGCCAGAAATGCTTGTTAACTGCACAGAGTCTACACTCAAC
TGAGTCACTAAATATTTTTTCATTTTTATTTATGGAAAGTATTGATCACT
CAATTTATTCTGGTTATAGTTTCCATAATCTCCTCCAAAACCCTTGCTAT
CATCTCTACATAAGTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TNCCNNCCTTTNNNCTTTTCTCCCTTCCTCCCTTCTTTCCCTTTTTTCTT
CCTTTCTTTCTTCCCTCCCTCCTTTTCTTTTTTCCTTTCTTTCTTCCTTT
CTTCTCTCCTTCCTTTCTTNTCTTNTCTTCTCTCCCTTTTTTTTTTTTTT
TTTTCTCCCTTCCCCCCCCTCTTTCCTCTTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAATGGATCTTTTTCTATGCATATTTTTGAAATATTGCTGGTAA
TTAGTTTATACATGTCTGTAAATATGTTTAGAAAAAAATCATTCTTTGAA
AATATATTTCCCTAGGGCAAAGGTGGGATTCTAGTTCTGAAACTGTCATG
TAGTTACTGTCAGCAATAAGTAGCTAGAGGATTCTTTTTGTGATTTTACA
CCTACATCTGCAAAGTTCTATAAATGTTCGCTGGGATTAGAGTGGAGATT
TTCTCTTAAAATTTACCTGATAAAGAAATTTCATGAAGATCTGCTTGTTG
GAGACCACAAGACCTCATTAAGCTGCTCTATATGCAATATGTTGCTTAAT
TGCTTGGATCAATCAAGTGACCACTGAGGAACATCACGAAGGGATAATAT
GAGTCTCTGGTTTTCAGTCTCACCCACCTTTAGTTAGAAAGATTGTCCTC
CATACAACCCCAATCCAGATGGGCTGAGAGGCAATGATGGAATGTTCAAA
AGAAACTACAGTGGCTCAGCTCATGGGGAATCTTTCTAAGATGTGAATAC
TGAGGACTTTGGGTCCTTGGGATACTTTTGTGATAAAGAAACTAAATTCC
TTTCAAGTATGGTTATATTGAAAAGAGTAACAGCATTGGGAGCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_j13.b1 MSMg01no501_j13.b1 CHROMAT_FILE:
MSMg01no501_j13.b1 PHD_FILE: MSMg01no501_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:27 2005
         (249 letters)



>mm_chr2_95424254_95424902
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggaaacaaatcatgatgtttttactttgcctatgtgagctctagacgtccctaagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgggaaacaaatcatgatgtttttactttgcctatgtgagctctagacgtccctaagata 390

                                                                       
Query: 61  atggaaatcactctttcaggaaccaccggtgtctaaggattaatctaaaatttcacaaca 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 389 atggaaatcactctttcaggaaccactggtgtctaaggattaatctaaaatttcacaaca 330

                                                                       
Query: 121 atacttaatcttaggtacatagtagaggtgactatgaggaaaactagtatgttccatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atacttaatcttaggtacatagtagaggtgactatgaggaaaactagtatgttccatcca 270

                                                                       
Query: 181 cattccctttttcaataataaatgccctgtaaatttccattccaaatttcagtcctcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cattccctttttcaataataaatgccctgtaaatttccattccaaatttcagtcctcaaa 210

                    
Query: 241 ttggctccc 249
           |||||||||
Sbjct: 209 ttggctccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no501_j13.g1 MSMg01no501_j13.g1 CHROMAT_FILE:
MSMg01no501_j13.g1 PHD_FILE: MSMg01no501_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:27 2005
         (639 letters)



>mm_chr2_95292976_95294014
          Length = 1039

 Score = 1181 bits (611), Expect = 0.0
 Identities = 632/639 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatggatctttttctatgcatatttttgaaatattgctggtaattagtttatacatgtct 60
           |||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||
Sbjct: 201 aatggatctttttctatgcatatttttgaaataacgctggtaattagttcatacatgtct 260

                                                                       
Query: 61  gtaaatatgtttagaaaaaaatcattctttgaaaatatatttccctagggcaaaggtggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaatatgtttagaaaaaaatcattctttgaaaatatatttccctagggcaaaggtggg 320

                                                                       
Query: 121 attctagttctgaaactgtcatgtagttactgtcagcaataagtagctagaggattcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attctagttctgaaactgtcatgtagttactgtcagcaataagtagctagaggattcttt 380

                                                                       
Query: 181 ttgtgattttacacctacatctgcaaagttctataaatgttcgctgggattagagtggag 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ttgtgattttacacctacatctgcaaagttctataaatgttcactgggattagagtggag 440

                                                                       
Query: 241 attttctcttaaaatttacctgataaagaaatttcatgaagatctgcttgttggagacca 300
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgctcataaaatttacctgataaagaaatttcatgaagatctgcttgttggagacca 500

                                                                       
Query: 301 caagacctcattaagctgctctatatgcaatatgttgcttaattgcttggatcaatcaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagacctcattaagctgctctatatgcaatatgttgcttaattgcttggatcaatcaag 560

                                                                       
Query: 361 tgaccactgaggaacatcacgaagggataatatgagtctctggttttcagtctcacccac 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 tgaccactgaggaacatcacgaagggataatatgagtttctggttttcagtctcacccac 620

                                                                       
Query: 421 ctttagttagaaagattgtcctccatacaaccccaatccagatgggctgagaggcaatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttagttagaaagattgtcctccatacaaccccaatccagatgggctgagaggcaatga 680

                                                                       
Query: 481 tggaatgttcaaaagaaactacagtggctcagctcatggggaatctttctaagatgtgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggaatgttcaaaagaaactacagtggctcagctcatggggaatctttctaagatgtgaa 740

                                                                       
Query: 541 tactgaggactttgggtccttgggatacttttgtgataaagaaactaaattcctttcaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tactgaggactttgggtccttgggatacttttgtgataaagaaactaaattcctttcaag 800

                                                  
Query: 601 tatggttatattgaaaagagtaacagcattgggagctat 639
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatggttatattgaaaagagtaacagcattgggagctat 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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