BAC Information

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BAC

Clone NameMSMg01-501M19
Chromosome2 (Build37)
Map Location 29,484,424 - 29,638,315
singlet/doubletdoublet
Overlap geneRapgef1, LOC433415, OTTMUSG00000012686, Trub2
Upstream geneTsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8
Downstream geneCoq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501M19.T7 (MSMg01no501_m19.b1)MSMg01-501M19.TJ (MSMg01no501_m19.g1)
ACCAG577308AG577309
length725723
length of high quality
(start - end)		615 (36 - 650)540 (60 - 599)
definitionCHROMAT_FILE: MSMg01no501_m19.b1 PHD_FILE: MSMg01no501_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:41 2005CHROMAT_FILE: MSMg01no501_m19.g1 PHD_FILE: MSMg01no501_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,637,722 - 29,638,315)(29,484,424 - 29,484,963)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCAGGAC
CATTCCTTCCAGTTTGCAATCCTAGTCAGGGCTGTGGTGAGACACTTGCC
CATTATACCAGTCTGCCAGCCACAGCTCCCATGTCCTTGACAAGTCCATG
AACATCTTATCTTTGTGCCTCAGTTTCCTCTAGTCTTCGATGGGAATGAA
GAAATAGGTCAAAGTGACTTCATGTGAAGCCTTGGCTCAGCTCCTGGTAC
ACAGTCCAGGCCAAATCAACGTCACGGCCACTGCTATCTCTCTCCTCCTT
GCTATTATCACCCCTTGTAAGGGCTGGTTGTCTGTACAGAGTTGGAGGAA
GAGGGGCTCATGAGGGCATCCAGAAATGCCCTTAACTTGGCCACTGAAAC
AGCCCCAGGACATGTGTGGGGTGACACTGTTTGGTTTGGCCAAGTGGGTG
GAGACTGGTGCTGGTGCCATGCTTGGGTCACAGGGAAGAGCACAGGGCTG
CCCTGAGCTCCAGAGTGGAGTGCACATCCTCCCTCAGGGCAGGGGAGCAG
CAGGCATGCTGTATGGAGCTCTAGGAGGCCCCACCCAGCACCAGACCACT
TCCTCAGCATCAGAGCTTAGAATGGGGACCCCCCTGCCTTGTCCCCACAG
GATTACACAGTGCGTGGCCTCCTGAGNCAAGCTACAGACAACTTCTGTGA
AGATGGACGGCTGATAGAAAAAACA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACTATACAACTGAGACTAACCAAAAACACACCTGGCCATTC
TGCCTTCTGTTCCCAGTTATTGGGCGTGCTGATGGTGTTGCAGTGAGGCT
GACAGCCAGCAAGCCCCAGGGATCTTCCCTCTCTACTCCCTCAACCCCAC
GGGGTCCTAGGTTTGCACCTGGGCCACATCTGGCCTTCTCTATGGGTGCC
AGAGACCCAAGCTCAGGTCCTCATGCTTGAGCAGCAGATGTTCTTACTCA
ACTCCTCAGCCCACAGATGTATGCGGAGGCCTCTGTAGCTTCCCAAGTGT
TGCACAGATACAAGCCTCTTTTGTTACTTTAGGTTTTGTTGACTCTGTCT
TACCTAAGGTGTTGGGGCTACACAACATTGTTCCAGGTAAGGGAGGTGGT
GACTAGTGTTCACTTTCTCATTTGTGCCAGACACTGTACTGCAGACAGAC
AGGCGCTTGCTTGATTCTCTTCTTACTAAAGAGTAAGCAGGCTTTGGGAC
CAGTTGACAGCTGTGGAAAAGGAGGTAGTGTTAGGGGAGGTACCTGACCT
GTAGGCACACACTGCANGGAACCTGCTTTTTCCTTTCCTGCCCCCTTGTA
TCTAGACCCTGGGTTCANGACTGGTCTGCTGAGTCACAGGGGTGGCTCAT
AAGCACCACTATTGACCTGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_m19.b1 MSMg01no501_m19.b1 CHROMAT_FILE:
MSMg01no501_m19.b1 PHD_FILE: MSMg01no501_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:41 2005
         (615 letters)



>mm_chr2_29637501_29638515
          Length = 1015

 Score = 1118 bits (578), Expect = 0.0
 Identities = 590/594 (99%)
 Strand = Plus / Minus

                                                                       
Query: 22  ttccagtttgcaatcctagtcagggctgtggtgagacacttgcccattataccagtctgc 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ttccagtttgcaatcctagtcagggctgtggtgagacacttgcccattataccagtctgc 756

                                                                       
Query: 82  cagccacagctcccatgtccttgacaagtccatgaacatcttatctttgtgcctcagttt 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cagccacagctcccatgtccttgacaagtccatgaacatcttatctttgtgcctcagttt 696

                                                                       
Query: 142 cctctagtcttcgatgggaatgaagaaataggtcaaagtgacttcatgtgaagccttggc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cctctagtcttcgatgggaatgaagaaataggtcaaagtgacttcatgtgaagccttggc 636

                                                                       
Query: 202 tcagctcctggtacacagtccaggccaaatcaacgtcacggccactgctatctctctcct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tcagctcctggtacacagtccaggccaaatcaacgtcacggccactgctatctctctcct 576

                                                                       
Query: 262 ccttgctattatcaccccttgtaagggctggttgtctgtacagagttggaggaagagggg 321
           ||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ccttgctattatcaccccagggaagggctggttgtctgtacagagttggaggaagagggg 516

                                                                       
Query: 322 ctcatgagggcatccagaaatgcccttaacttggccactgaaacagccccaggacatgtg 381
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 515 ctcatgagggcatccagaaatgcccttaatttggccactgaaacagccccaggacatgtg 456

                                                                       
Query: 382 tggggtgacactgtttggtttggccaagtgggtggagactggtgctggtgccatgcttgg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tggggtgacactgtttggtttggccaagtgggtggagactggtgctggtgccatgcttgg 396

                                                                       
Query: 442 gtcacagggaagagcacagggctgccctgagctccagagtggagtgcacatcctccctca 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtcacagggaagagcacagggctgccctgagctccagagtggagtgcacatcctccctca 336

                                                                       
Query: 502 gggcaggggagcagcaggcatgctgtatggagctctaggaggccccacccagcaccagac 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gggcaggggagcagcaggcatgctgtatggagctctaggaggccccacccagcaccagac 276

                                                                 
Query: 562 cacttcctcagcatcagagcttagaatggggacccccctgccttgtccccacag 615
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cacttcctcagcatcagagcttagaatggggacccccctgccttgtccccacag 222


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no501_m19.g1 MSMg01no501_m19.g1 CHROMAT_FILE:
MSMg01no501_m19.g1 PHD_FILE: MSMg01no501_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:41 2005
         (540 letters)



>mm_chr2_29484224_29485163
          Length = 940

 Score = 1044 bits (540), Expect = 0.0
 Identities = 540/540 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatacaactgagactaaccaaaaacacacctggccattctgccttctgttcccagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatacaactgagactaaccaaaaacacacctggccattctgccttctgttcccagtta 260

                                                                       
Query: 61  ttgggcgtgctgatggtgttgcagtgaggctgacagccagcaagccccagggatcttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgggcgtgctgatggtgttgcagtgaggctgacagccagcaagccccagggatcttccc 320

                                                                       
Query: 121 tctctactccctcaaccccacggggtcctaggtttgcacctgggccacatctggccttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctactccctcaaccccacggggtcctaggtttgcacctgggccacatctggccttct 380

                                                                       
Query: 181 ctatgggtgccagagacccaagctcaggtcctcatgcttgagcagcagatgttcttactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatgggtgccagagacccaagctcaggtcctcatgcttgagcagcagatgttcttactc 440

                                                                       
Query: 241 aactcctcagcccacagatgtatgcggaggcctctgtagcttcccaagtgttgcacagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactcctcagcccacagatgtatgcggaggcctctgtagcttcccaagtgttgcacagat 500

                                                                       
Query: 301 acaagcctcttttgttactttaggttttgttgactctgtcttacctaaggtgttggggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaagcctcttttgttactttaggttttgttgactctgtcttacctaaggtgttggggct 560

                                                                       
Query: 361 acacaacattgttccaggtaagggaggtggtgactagtgttcactttctcatttgtgcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacaacattgttccaggtaagggaggtggtgactagtgttcactttctcatttgtgcca 620

                                                                       
Query: 421 gacactgtactgcagacagacaggcgcttgcttgattctcttcttactaaagagtaagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacactgtactgcagacagacaggcgcttgcttgattctcttcttactaaagagtaagca 680

                                                                       
Query: 481 ggctttgggaccagttgacagctgtggaaaaggaggtagtgttaggggaggtacctgacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctttgggaccagttgacagctgtggaaaaggaggtagtgttaggggaggtacctgacc 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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