Query= MSMg01no501_o23.b1 MSMg01no501_o23.b1 CHROMAT_FILE:
MSMg01no501_o23.b1 PHD_FILE: MSMg01no501_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:51 2005
(594 letters)
>mm_chr2_64188993_64189985
Length = 993
Score = 1100 bits (569), Expect = 0.0
Identities = 587/593 (98%), Gaps = 3/593 (0%)
Strand = Plus / Minus
Query: 3 gaattccttccctgttct-tttaaaatatttctcaaatactttattccatcctgttacta 61
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gaattccttccctgtt-tatttaaaatatttctcaaatactttattccatcctgttacta 735
Query: 62 accagaaggtcagctcatatggctaatgcaaaattgttgtcccccaaatgatgtaaatta 121
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 734 accagaaggtcagctcatat-gctaatgcaaaattgttgttccccaaatgatgtaaatta 676
Query: 122 ttttttcgtatgtgtacagaagttagcctttttattgactgatgagaaacttctgggaaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttttttcgtatgtgtacagaagttagcctttttattgactgatgagaaacttctgggaaa 616
Query: 182 cttgaggagaaaaaaataaataaaatccagtgtatgctttcaacccaagggctaaaattt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cttgaggagaaaaaaataaataaaatccagtgtatgctttcaacccaagggctaaaattt 556
Query: 242 gaggtgtggtaattttttggaaatctcctttcaagtctcaagggtctcggagaactgata 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gaggtgtggtaattttttggaaatctcctttcaagtctcaagggtctcggagaactgata 496
Query: 302 gcatttggtgaccttcagaggcagtatatcatcctcagaggattgaaattgatttttttt 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gcatttggtgaccctcagaggcagtatatcatcctcagaggattgaaattgatttttttt 436
Query: 362 catgttgctgtgtaagaattcagagcctttcctccctgacccgcatgctgcctaggagtg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 catgttgctgtgtaagaattcagagcctttcctccctgacccgcatgctgcctaggagtg 376
Query: 422 tgccatggtgctaacagtgaaggctgtgagcacggggctttgggggagtcataaagggtc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgccatggtgctaacagtgaaggctgtgagcacggggctttgggggagtcataaagggtc 316
Query: 482 aacagtagggctctcttcctgcctgcactgttttgaagttattcttccagattgtatttt 541
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agcagtagggctctcttcctgcctgcactgttttgaagttattcttccagattgtatttt 256
Query: 542 cattttccttcattcttccccgcacaccagctcgcatgtcggatcaatctaga 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cattttccttcattcttccccgcacaccagctcgcatgtcggatcaatctaga 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 993
Length adjustment: 10
Effective length of query: 584
Effective length of database: 983
Effective search space: 574072
Effective search space used: 574072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_o23.g1 MSMg01no501_o23.g1 CHROMAT_FILE:
MSMg01no501_o23.g1 PHD_FILE: MSMg01no501_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:51 2005
(566 letters)
>mm_chr2_63993407_63994371
Length = 965
Score = 1048 bits (542), Expect = 0.0
Identities = 560/566 (98%), Gaps = 1/566 (0%)
Strand = Plus / Plus
Query: 1 taaacttctaagacttgtggaatatgaagtggtaaggctttctaagcttttatcatattg 60
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 taaacttctaaaacttgtggaatatgaagtggtaaggcttcctaagcttttatcatattg 260
Query: 61 tttccccaagtctaatcaaatatctacctatctccttgaaaaagaaagagaagaaatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccccaagtctaatcaaatatctacctatctccttgaaaaagaaagagaagaaatgta 320
Query: 121 agtaaaaataccccccccccaaagaaaaaggccaatgagaacagaaattattattttcca 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaaaaataccccccccc-aaagaaaaaggccaatgagaacagaaattattattttcca 379
Query: 181 tccacttacagaggaggctcctcaggaacagagcatgaagttagcaaagagttagtgtcc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 380 tccacttacagaggaggctcctcaggaacagagcatgaagttagcaaagagttagtgtgc 439
Query: 241 cctaactaatgggatcttgaaagaattagtctctactatctctgaccaaacacaggttaa 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 cctaactaatgggatcttgaaagaattagtctctactgtctctgaccaaacacaggttaa 499
Query: 301 caacaattaagataacaatgcataatgacaacaagctatctaataaaagaagagtaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caacaattaagataacaatgcataatgacaacaagctatctaataaaagaagagtaaaaa 559
Query: 361 ctgatctcaaaagataggaagttatacacaagcatgggtcatgaccgaattatattttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgatctcaaaagataggaagttatacacaagcatgggtcatgaccgaattatattttac 619
Query: 421 catgcttccaaagaattcatttttttaaaaagaaaaccagactcctattgctatttaccc 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 620 catgcttccaaagaattcattttttaaaaaagaaaaccagactcctattgctatttaccc 679
Query: 481 aactacgtgtaaagcgtaagtccaataatcatgacccactccttagggaaattacttttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aactacgtgtaaagcgtaagtccaataatcatgacccactccttagggaaattacttttc 739
Query: 541 atgactcatcaaacattcctgacata 566
||||||||||||||||||||||||||
Sbjct: 740 atgactcatcaaacattcctgacata 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 965
Length adjustment: 10
Effective length of query: 556
Effective length of database: 955
Effective search space: 530980
Effective search space used: 530980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
