Query= MSMg01no501_p06.b1 MSMg01no501_p06.b1 CHROMAT_FILE:
MSMg01no501_p06.b1 PHD_FILE: MSMg01no501_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:52 2005
(261 letters)
>mm_chr2_45435268_45435929
Length = 662
Score = 456 bits (236), Expect = e-133
Identities = 249/254 (98%), Gaps = 5/254 (1%)
Strand = Plus / Minus
Query: 1 caggcatgaagacaggcatgggtgccttataaacggtccttgaaactccagcttgaatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caggcatgaagacaggcatgggtgccttataaacggtccttgaaactccagcttgaatag 359
Query: 61 ggagtaatttgtatgttccccattgcttctaggacttccctgcttacactagacagcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggagtaatttgtatgttccccattgcttctaggacttccctgcttacactagacagcaca 299
Query: 121 tataaaatagactctcttgataatagactaggatatgataggtatttttaa-ttttccta 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 298 tataaaatagactctcttgataatagactaggatatgataggtatttttaatttttccta 239
Query: 180 ctgttctatcatggggcctgaaaagcctgataagga--tttttttgtttttgtttttgtt 237
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 238 ctgttctatcatggggcctgaaaagcctgataaggatttttttttgtttt-gtttttgtt 180
Query: 238 tttgttt-gttttt 250
||||||| ||||||
Sbjct: 179 tttgttttgttttt 166
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 662
Length adjustment: 9
Effective length of query: 252
Effective length of database: 653
Effective search space: 164556
Effective search space used: 164556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no501_p06.g1 MSMg01no501_p06.g1 CHROMAT_FILE:
MSMg01no501_p06.g1 PHD_FILE: MSMg01no501_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:52 2005
(191 letters)
>mm_chr2_45331776_45332366
Length = 591
Score = 369 bits (191), Expect = e-107
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 1 tcctggcctctggctgcttctctaatagcagcttatagtcttgaaactgtccagagatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctggcctctggctgcttctctaatagcagcttatagtcttgaaactgtccagagatat 260
Query: 61 atgggaaggaattttagtatagtgtgaaaaaatacacacttgtaaaatatttatagtatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgggaaggaattttagtatagtgtgaaaaaatacacacttgtaaaatatttatagtatt 320
Query: 121 ttggtttaaccttttggcaaacaaggtaataaggaatgtgagtttgtaataattagggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggtttaaccttttggcaaacaaggtaataaggaatgtgagtttgtaataattagggga 380
Query: 181 aaatatgccca 191
|||||||||||
Sbjct: 381 aaatatgccca 391
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space: 106689
Effective search space used: 106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
