BAC Information

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BAC

Clone NameMSMg01-502H15
Chromosome2 (Build37)
Map Location 111,617,892 - 111,618,537
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301
Downstream geneOlfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502H15.T7 (MSMg01no502_h15.b1)MSMg01-502H15.TJ (MSMg01no502_h15.g1)
ACCAG577822AG577823
length702748
length of high quality
(start - end)
578 (61 - 638)642 (74 - 715)
definitionCHROMAT_FILE: MSMg01no502_h15.b1 PHD_FILE: MSMg01no502_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:31 2005CHROMAT_FILE: MSMg01no502_h15.g1 PHD_FILE: MSMg01no502_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCTTGTTTTTC
TCTGAGTCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCAACCTT
CTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGAT
AGGTAAAGATCCTTTCCCAATCCGTTGTTGGCCTTTTTGTCTTATTGACG
GTGTCTGTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTC
AATTCTCGATCTTACAGCACAAGCCATTGTTGTTCTATTCAGGAATTTTC
CCTTTGTGCCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGT
TTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTGTC
CTTAGTACAAGGAGATAGGAATGGATCAAATCACATTCTTCTACATGATA
ACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCTTCCAC
TGGATGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGCTCACTTG
TGGGTTCATTTCTGGGTCTTCAATTCTATTTCATTATACAATTGTCTGTC
ACTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGCAAAGCT
TTAGGTCAGGCATGGTGATTCTACTGGGGGTTCTTTTATCCTTGAGAAGA
GT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTATCTTAGTGGCTATTCTCATAAAA
GTACTAACTTTGGCTGGCGGGTAATATTTAAGAAGTTAATGGAGAGAAAC
ATACTAAATTTTCCTTTTAGTAGCATTTAAACCAATCTTTATTATTTTCT
GATTAAATATTTTTTCTATGTAGATTTTTGGTATCAAAGTTTTAAACTCT
CTAATAGTGTCAATATTTATATTTGGTAAGAATTTGTGGATACATTTATA
ATTGTATACTTTATTTATATTATACGTAATTATATACATTAATAGGTACC
ACTTTGTATTGTACTGCAGTTGCTTTTAAAGTGATTTGTGTGTATGTGTG
TGTGTGTGTGTGTGTGTGTATTCTGAAAAAAAGTGTTAAGCTGAACAATG
AAATAATTGCCGAAAAGAGTAAAAACAATATTGTTTTAATATGTACATAA
AGTATACAAAACAGATGTAGTCTTAGGGATCACTTGCTGATTTCTCTGTA
TGTGTGTTTTTTACACTGTCCCAATACTGTATGACTTAAATGTGCTAATT
TTGTAAGTAAGGAAATGTAAGCAAATACTTCTAAGACAAGGCTATACATA
CTACTAACTGTAGTATACTATTACATACTATATATATATATATATATATA
TATATATATAATCTTATTTATTTAAAAGTCTATACTTAACTTAGTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_h15.g1 MSMg01no502_h15.g1 CHROMAT_FILE:
MSMg01no502_h15.g1 PHD_FILE: MSMg01no502_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:31 2005
         (642 letters)



>mm_chr2_111617701_111618742
          Length = 1042

 Score = 1141 bits (590), Expect = 0.0
 Identities = 629/648 (97%), Gaps = 13/648 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatcttagtggctattctcataaaagtactaactttggctggcgggtaatatttaaga 60
           |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 192 tttatcttggtggctattctcataaaagtactaactttggctggcgagtaatatttaaga 251

                                                                       
Query: 61  agttaatggagagaaacatactaaattttccttttagtagcatttaaaccaatctttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agttaatggagagaaacatactaaattttccttttagtagcatttaaaccaatctttatt 311

                                                                       
Query: 121 attttctgattaaatattttttctatgtagatttttggtatcaaagttttaaactctcta 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 312 attttctgattaaatattttt-ctatgtagatttttggtatcaaagttttaaactctcta 370

                                                                       
Query: 181 atagtgtcaatatttatatttggtaagaatttgtggatacatttataattgtatacttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atagtgtcaatatttatatttggtaagaatttgtggatacatttataattgtatacttta 430

                                                                       
Query: 241 tttatattatacgtaattatatacattaataggtaccactttgtattgtactgcagttgc 300
           || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttcatattatatgtaattatatacattaataggtaccactttgtattgtactgcagttgc 490

                                                                       
Query: 301 ttttaaagtgatttgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgt----------attc 350
           ||||||||||||||||||||||||||||||||||||||||||||||          ||||
Sbjct: 491 ttttaaagtgatttgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattc 550

                                                                       
Query: 351 tgaaaaaaagtgttaagctgaacaatgaaataattgccgaaaagagtaaaaacaatattg 410
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 551 tgaaaaaaagtgttaagctgaacaatgaaataattgccgaaa-gagtaaaaacaatattg 609

                                                                       
Query: 411 ttttaatatgtacataaagtatacaaaacagatgtagtcttagggatcacttgctgattt 470
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 610 ttttaatatgtacataaagtatacaaaacagatatagtcttagggatcacttgctgattt 669

                                                                       
Query: 471 ctctgtatgtgtgtttttt-acactgtcccaatactgtatgacttaaatgtgctaatttt 529
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ctctgtatgtgtgtttttttacactgtcccaatactgtatgacttaaatgtgctaatttt 729

                                                                       
Query: 530 gtaagtaaggaaatgtaagcaaatacttctaagacaaggctatacatactactaactgta 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gtaagtaaggaaatgtaagcaaatacttctaagacaaggctatacatactactaactgta 789

                                                           
Query: 590 gtatactattacatactatatatatatatatatatatatatatatata 637
           ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 790 gtatactattacataatatatatatatatatatatatatatatatata 837



 Score = 64.5 bits (33), Expect = 2e-14
 Identities = 39/41 (95%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                    
Query: 597 attacatactatatatatatatatatatatatatatatata 637
           |||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 853 attatata-tatatatatatatatatatatatatatatata 814



 Score = 62.6 bits (32), Expect = 9e-14
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 606 tatatatatatatatatatatatatatatata 637
           ||||||||||||||||||||||||||||||||
Sbjct: 837 tatatatatatatatatatatatatatatata 806



 Score = 62.6 bits (32), Expect = 9e-14
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 606 tatatatatatatatatatatatatatatata 637
           ||||||||||||||||||||||||||||||||
Sbjct: 839 tatatatatatatatatatatatatatatata 808



 Score = 62.6 bits (32), Expect = 9e-14
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 606 tatatatatatatatatatatatatatatata 637
           ||||||||||||||||||||||||||||||||
Sbjct: 841 tatatatatatatatatatatatatatatata 810



 Score = 62.6 bits (32), Expect = 9e-14
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 606 tatatatatatatatatatatatatatatata 637
           ||||||||||||||||||||||||||||||||
Sbjct: 843 tatatatatatatatatatatatatatatata 812



 Score = 60.7 bits (31), Expect = 4e-13
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 606 tatatatatatatatatatatatatatatat 636
           |||||||||||||||||||||||||||||||
Sbjct: 835 tatatatatatatatatatatatatatatat 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 8
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)