BAC Information

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BAC

Clone NameMSMg01-502K01
Chromosome2 (Build37)
Map Location 132,617,666 - 132,617,921
singlet/doubletsinglet
Overlap geneChgb
Upstream geneLamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906
Downstream gene3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785, A430048G15Rik, Bmp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502K01.T7 (MSMg01no502_k01.b1)MSMg01-502K01.TJ (MSMg01no502_k01.g1)
ACCAG577937AG577938
length696703
length of high quality
(start - end)
243 (56 - 298)391 (310 - 700)
definitionCHROMAT_FILE: MSMg01no502_k01.b1 PHD_FILE: MSMg01no502_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:43 2005CHROMAT_FILE: MSMg01no502_k01.g1 PHD_FILE: MSMg01no502_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATTTCCAGAAGACCGCGGAATTCTTTGAATGCTGA
AGCGATGGAAGGAAGCTCTTTGACTGTGTTTAAATCTAATGAGCTCTCTA
CATGTTTAAAGGTTTTAATAATACCTATTATCTCTATTTGTAACTGCCAA
TGGTCAAACTGAAACCCATATGTAGCTTTAGGAAAGTCAGGAGAACTCTT
ACAGTTCATCTGGTTCAGCCTCCTTGTTTTGCACGTATAAAAGACACGGA
GACTCAGAATGATATAATTCAGGATCCATTCTTTCCACACTTGAGTATTG
TTTAAAGGTTAGCATTGCATAAATGAATGGCTCCAACTACAGTTTAACTA
AAAAAAAAAAAAATTACCAGACTTTGTTAGCTAATCAATTGTGTGGACCC
TATCCAACAGGAAATGACTGCTCAACTTAGCTCAGTCATGGATTGTGCAT
TTCATCCTATAATGAACTGTGAACTTCACAGTGGTCCCACGCCATCGGAT
CAGGTAGTGATGCCAGAGCCCCATTGGTTTCTTACTGTATACTTAATGAT
GTTTGTACAGCAACAAGATAGCCCAATGATGCTCTTCTCAGAATCACTAA
ATAATGCCCAGCTGCACCCAGTGATAAGAATGGAAAGTCTCTCTGTCTCT
CTGTCTCTCTGTCTCTCTGTCTCTCTCTCTGTCTCTCTCTCTCTCT
CCTGGCGGCCGCCTGGATCAAAAAGGGGGGTGAACTATAGAAGTTTCTGC
AAAAGTCTACATCTTGATCTGAAGGCTGCTAGGAGAAGACTGTCTTCCAG
GCACCTAGGAGGAGGGTCTCAAAGCCCACTCCCACAGTGGGCACACTTCC
TCCAACCAGGCCACAGCTACTCCAGCAGGGCCACATCTCCTAATAGTATC
CCTCCCTGGGCCAAGCATATGCATAACACTACAGTCCCACAAGTAGAGTA
TGCTGGGACCAGAACCTAGCAGAATAGTCATCAAAGAGACCAGAGAGACT
TTATTTATGTAAATGATGGGATCAGATGCACATTAGGAGGAGCTCAGGGA
GTCCTGTGAGGAAGGGGAGGAAGGGTTGGAGGAACCAGAGGGGTCAGGGA
CACCATGAAAGCAAGACCTATAGAATCAACTAACTGGGACTCATGGGAAC
TAGCAAAGACTAGGGAGCCTATAGGTGTCTGACCTAGGTCCTCTGCATAC
ATGTTATGGCTGAGTAGCGCTATGGTCTTGTGGGAAACTCAGTAAGCCAC
GGTTGTCCCTAACTCTTTCACCTACTTGTGGGACCCTTTTCCTTCTGGGT
TGCCTCGTCCAGCCTTGTCATGATGCTACGCATCAGATCTTATTGTAGCT
TGCTATGCCATGTTTGGTTGCTGTCTCTGGGAGGCCTGCCCTTTTCTGAG
GGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_k01.b1 MSMg01no502_k01.b1 CHROMAT_FILE:
MSMg01no502_k01.b1 PHD_FILE: MSMg01no502_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:43 2005
         (243 letters)



>mm_chr2_132617591_132618233
          Length = 643

 Score =  437 bits (226), Expect = e-127
 Identities = 242/256 (94%), Gaps = 14/256 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaaggaagctctttgactgtgtttaaatctaatgagctctctacatgtttaaaggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tggaaggaagctctttgactgtgtttaaatctaatgagctctctacatgtttaaaggttt 272

                                                                       
Query: 61  taataatacctattatctctatttgtaactgccaatggtcaaactgaaacccatatgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 taataatacctattatctctatttgtaactgccaatggtcaaactgaaacccatatgtag 212

                                                                       
Query: 121 ctttaggaaag--------------tcaggagaactcttacagttcatctggttcagcct 166
           |||||||||||              |||||||||||||||||||||||||||||||||||
Sbjct: 211 ctttaggaaagactggaatttaaaatcaggagaactcttacagttcatctggttcagcct 152

                                                                       
Query: 167 ccttgttttgcacgtataaaagacacggagactcagaatgatataattcaggatccattc 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ccttgttttgcacgtataaaagacacggagactcagaatgatataattcaggatccattc 92

                           
Query: 227 tttccacacttgagta 242
           ||||||||||||||||
Sbjct: 91  tttccacacttgagta 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)