Query= MSMg01no502_l14.b1 MSMg01no502_l14.b1 CHROMAT_FILE:
MSMg01no502_l14.b1 PHD_FILE: MSMg01no502_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:50 2005
(676 letters)
>mm_chr10_17850686_17851760
Length = 1075
Score = 1122 bits (580), Expect = 0.0
Identities = 644/676 (95%), Gaps = 25/676 (3%)
Strand = Plus / Minus
Query: 1 ggccttttctcacaagcagttgatcattcacccccttctggcttccttctgcctaaccat 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1021 ggccttttctcacaagcagttgatcattca--cccttctggcttccttctgcctaaccat 964
Query: 61 tctcagagtaactcatcaacttttctaaagcttgcttctctccctctgtctctctctctg 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 963 tctcagagtaactcatcaacttttctaaagcttgcttctc--------tctctctctc-- 914
Query: 121 tctctctgtttctctgtctctgtctctctctctctgcccctccctccctcccccctttct 180
|||||| | | ||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 913 tctctc-----c-c---ctc--tctctctctctc-ccccctccctccctcccccctttct 866
Query: 181 ttcacaaactgtaagtaaatatgaagcaagccactcacatcagcgtaaatcataacgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ttcacaaactgtaagtaaatatgaagcaagccactcacatcagcgtaaatcataacgaaa 806
Query: 241 gctaatgttagtgcttgcatgcaggagctgactctggtggtggatggccactgtgtttct 300
|| || | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 805 gccaa-ggcagtgcttgcatgcaggagctgactctggtggtggatggccgctgtgtttct 747
Query: 301 atttacctgcacactcaaagcaaaagccaaagcgccaacaaattttgctcttcgcctaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 atttacctgcacactcaaagcaaaagccaaagcgccaacaaattttgctcttcgcctaga 687
Query: 361 actgatcaattttagcaacttcaatgaaaacaaagaactattaacttttcgtgtggttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 actgatcaattttagcaacttcaatgaaaacaaagaactattaacttttcgtgtggttaa 627
Query: 421 agctaccaagctacctccctttcagcttctctcaaatggaattagaaattcgtttccaac 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 626 agctaccaagctacctccctttcagtttctctcaaatggaattagaaattcgtttccaac 567
Query: 481 ttgtaagtccttccttccctgggtttctatttaaggatgcctccaactacaccagttctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttgtaagtccttccttccctgggtttctatttaaggatgcctccaactacaccagttctc 507
Query: 541 tgtgtctccccacctgtcgcccctaggtgaaacaaagcaaaactgtattgttctcaatac 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgtgtctccccacctgttgcccctaggtgaaacaaagcaaaactgtattgttctcaatac 447
Query: 601 atctcaattgtctctcaaatacatctgcacaaaataccaagcctgacaaaagttataaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atctcaattgtctctcaaatacatctgcacaaaataccaagcctgacaaaagttataaaa 387
Query: 661 atatagttgtgaaaaa 676
||||||||||||||||
Sbjct: 386 atatagttgtgaaaaa 371
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1075
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1065
Effective search space: 709290
Effective search space used: 709290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_l14.g1 MSMg01no502_l14.g1 CHROMAT_FILE:
MSMg01no502_l14.g1 PHD_FILE: MSMg01no502_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:50 2005
(659 letters)
>mm_chr2_4506379_4507440
Length = 1062
Score = 1214 bits (628), Expect = 0.0
Identities = 652/662 (98%), Gaps = 5/662 (0%)
Strand = Plus / Minus
Query: 1 aataccatgtggaaatggtatagcttcatgaaggacggtcaggggagtggactctcctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aataccatgtggaaatggtatagcttcatgaaggacggtcaggggagtggactctcctga 802
Query: 61 acaagaacactgtcatttctgattgtcttaagacatgtcacaccagccaatttttatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acaagaacactgtcatttctgattgtcttaagacatgtcacaccagccaatttttatatg 742
Query: 121 ctttacaaaagggagggggagaataaagtttaagttaatattaataatttcaatcatgac 180
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 ctttac-aaagggagggggagaataaagtttaagttaatattagtaatttcaatcatgac 683
Query: 181 ttaaattttctcttgtctactgaaagatgctggtttttgcttattgcatatataatatct 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 682 ttaaattttctcttgtctactgaaatatgctggtttttgcttattgcatatataatatct 623
Query: 241 gttctttgcaaaatatatgaaaatatagacaggtataataataattacatatcacaggta 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gttctttgaaaaatatatgaaaatatagacaggtataataataattacatatcacaggta 563
Query: 301 atataatagtacacatgaacacacataccaactagaattttgttctattttatctgagtg 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atataataatacacatgaacacacataccaactagaattttgttctattttatctgagtg 503
Query: 361 ctatatgctgagaaaacgtttctcctaatggaaagaatacaatatagagtgatgca---- 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctatatgctgagaaaacgtttctcctaatggaaagaatacaatatagagtgatgcatagt 443
Query: 417 tagttttcaagagacgtaaatgtactttccttgctttcctggctagcacgtctgcatgat 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 442 tagttttcaagagacgtaaatgtacattccttgctttcctggctagcacgtctgcatgat 383
Query: 477 tcaaacagcaggcttctagataggaggcaactgttgaagataccaactggaggaatttag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcaaacagcaggcttctagataggaggcaactgttgaagataccaactggaggaatttag 323
Query: 537 cttaaaccaaaagattaatttctaggttgcagtgtctggctcctggagcaggtttcttat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttaaaccaaaagattaatttctaggttgcagtgtctggctcctggagcaggtttcttat 263
Query: 597 actgagcttggtagctctttctacattgatgggttatagagtgtattgatggcttcccta 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actgagcttggtagctctttctacattgatgggttatagagtgtattgatggcttcccta 203
Query: 657 ga 658
||
Sbjct: 202 ga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1062
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1052
Effective search space: 682748
Effective search space used: 682748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
