BAC Information

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BAC

Clone NameMSMg01-502N06
Chromosome2 (Build37)
Map Location 108,282,984 - 108,403,397
singlet/doubletdoublet
Overlap geneLOC100043078
Upstream genenone
Downstream geneLOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502N06.T7 (MSMg01no502_n06.b1)MSMg01-502N06.TJ (MSMg01no502_n06.g1)
ACCAG578091AG578092
length742738
length of high quality
(start - end)
589 (64 - 652)330 (324 - 653)
definitionCHROMAT_FILE: MSMg01no502_n06.b1 PHD_FILE: MSMg01no502_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:57 2005CHROMAT_FILE: MSMg01no502_n06.g1 PHD_FILE: MSMg01no502_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,282,984 - 108,283,572)(108,403,068 - 108,403,397)
sequence
GCGGCCGCTATACGACTCACTTATTCGAGAGGATCCGCGGAATTCCAGAA
GTTACACAGCTTCAAATTTACTTAAGAAGTTCTGCTTCTTCTTGTTTTAG
TGCTCCTTAAACTTTAGAAAACAACTCCCGGGATCAAAATTGGTTGACCA
CCAATGCTAAAATTCTGAAGTGGGCCTTGCTGCTTTACTTTGGCTTCTCC
AGGTCCCCTAACCAGGATCCATAATGCCAAGATCAAGAGTAGAAAAAGCC
CTCCTATGAACAGAGATACAACACTGAATGACAGAAGACATGTATAATCT
TTTCCATTCATTTTAGTTCCAAACTACAAACTGTACTCTGTGGGAGAAAG
AAATGAACTCTAAAAGGAAAGCAAATGATACAGCTTTCATAGACGTGTTG
GATTACAAAAATAAACAAACACAAAATAAGTTCTAGTGAAAAATATGTTT
TCTAGCTATATAATAGTCACTCATGTTAATTCATGATTAAGAAAGTAAAG
AAGCTAGATAGCATAAACTGGGCCAAGAACCTGGAAATCCAACAGCAAAA
ATACATTTGTTTTCCTTTTTCAAAATAGTCTTCTATTTTATTTTTTGCTG
TTTGTCTCCTTCAAAGCTCAATGGCTGTCTTGAGAAATCCTGTTTTCTAT
AAGCAGAGAACCAACTTGTTAGCTAATTTAATTTATCTCTGTCCAAATCC
TTCATAGCTTAAAATTTGGGTGTTTTTTTCTCAGGGAGATAG
CGATGCAGTGGGAGGTCTGGCGGCCGCCTGGTGCATACTTTGGGTNGAAC
TATANAAGGTGCGGCAGAAATCTTCTGCTCCATATCTTCAAAAATCACAT
GTTATATTTTGCCCTTTGACAGATGTTATCATTGCAGGACTAATGTTGTA
TCTCACTGTACAATTTCCACAGCCCCCTAAATTTTAGTGATATGGAATAT
TTTCATACACTCCTTCAGTACTCATTTAGATTTTGAGTTATATCTATTGT
TCATACTTAGATTGGGTTTTTCATTATGCTTACAGAAACATGATATTTCT
TGCACTTCAGGTTGTCAATAATAAAATGTGGAACAATAAATTTTGATAAC
AGTATGAAAGCAAGAATACACACATATACACATACAGAGAGAGAGAGGGA
GACAGAGAGAGAGAGAGAAAGACAGAGAGAAGGAGAAAGGGAGGGAGAAA
TATAAATGATTTTATGCTATAGTCTTTCATCAGTATAATTTTATACAAAA
CAAAGTAGTTCTGTAAGAAAATAAAAGGAAAAGTGCTTTAGCCTATAGCA
ATATACTGTAGGGCAGTTCTAGTAAAGAATGTCTTAATAGATCACTGTGG
ATAAACACTGAAAATATACACACAGTCCGAAGTGCAAAATGTCCGTTGCA
ATCTCTCTTACAGCAGAGTTTTAAGTTTGAGAAATTAACATAAATGAATA
TTTTATAACAATTGTAATTTAATGAATAAATAAGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_n06.b1 MSMg01no502_n06.b1 CHROMAT_FILE:
MSMg01no502_n06.b1 PHD_FILE: MSMg01no502_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:57 2005
         (589 letters)



>mm_chr2_108282784_108283772
          Length = 989

 Score = 1108 bits (573), Expect = 0.0
 Identities = 585/589 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatttacttaagaagttctgcttcttcttgttttagtgctccttaaactttagaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatttacttaagaagttctgcttcttcttgttttagtgctccttaaactttagaaaaca 260

                                                                       
Query: 61  actcccgggatcaaaattggttgaccaccaatgctaaaattctgaagtgggccttgctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcccgggatcaaaattggttgaccaccaatgctaaaattctgaagtgggccttgctgc 320

                                                                       
Query: 121 tttactttggcttctccaggtcccctaaccaggatccataatgccaagatcaagagtaga 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tttactttggcttctccaggtcccctaaccaggatccttaatgccaagatcaagagtaga 380

                                                                       
Query: 181 aaaagccctcctatgaacagagatacaacactgaatgacagaagacatgtataatctttt 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 aaaagccctcctatgaacagagatacaacactaaatgacagaagacatgtataatctttt 440

                                                                       
Query: 241 ccattcattttagttccaaactacaaactgtactctgtgggagaaagaaatgaactctaa 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccattcactttagttccaaactacaaactgtactctgtgggagaaagaaatgaactctaa 500

                                                                       
Query: 301 aaggaaagcaaatgatacagctttcatagacgtgttggattacaaaaataaacaaacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggaaagcaaatgatacagctttcatagacgtgttggattacaaaaataaacaaacaca 560

                                                                       
Query: 361 aaataagttctagtgaaaaatatgttttctagctatataatagtcactcatgttaattca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaataagttctagtgaaaaatatgttttctagctatataatagtcactcatgttaattca 620

                                                                       
Query: 421 tgattaagaaagtaaagaagctagatagcataaactgggccaagaacctggaaatccaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgattaagaaagtaaagaagctagatagcataaactgggccaagaacctggaaatccaac 680

                                                                       
Query: 481 agcaaaaatacatttgttttcctttttcaaaatagtcttctattttattttttgctgttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcaaaaatacatttgttttcctttttcaaaatagtcttctattttattttttgctgttt 740

                                                            
Query: 541 gtctccttcaaagctcaatggctgtcttgagaaatcctgttttctataa 589
           |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 gtctccttcaaagctcaatggctgtcttgagaaatcttgttttctataa 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no502_n06.g1 MSMg01no502_n06.g1 CHROMAT_FILE:
MSMg01no502_n06.g1 PHD_FILE: MSMg01no502_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:57 2005
         (330 letters)



>mm_chr2_108402743_108403472
          Length = 730

 Score =  630 bits (326), Expect = 0.0
 Identities = 329/330 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgtggaacaataaattttgataacagtatgaaagcaagaatacacacatatacacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aaatgtggaacaataaattttgataacagtatgaaagcaagaatacacacatatacacat 596

                                                                       
Query: 61  acagagagagagagggagacagagagagagagagaaagacagagagaaggagaaagggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 acagagagagagagggagacagagagagagagagaaagacagagagaaggagaaagggag 536

                                                                       
Query: 121 ggagaaatataaatgattttatgctatagtctttcatcagtataattttatacaaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ggagaaatataaatgattttatgctatagtctttcatcagtataattttatacaaaacaa 476

                                                                       
Query: 181 agtagttctgtaagaaaataaaaggaaaagtgctttagcctatagcaatatactgtaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agtagttctgtaagaaaataaaaggaaaagtgctttagcctatagcaatatactgtaggg 416

                                                                       
Query: 241 cagttctagtaaagaatgtcttaatagatcactgtggataaacactgaaaatatacacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cagttctagtaaagaatgtcttaatagatcactgtggataaacactgaaaatatacacac 356

                                         
Query: 301 agtccgaagtgcaaaatgtccgttgcaatc 330
           ||||| ||||||||||||||||||||||||
Sbjct: 355 agtccaaagtgcaaaatgtccgttgcaatc 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)