BAC Information

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BAC

Clone NameMSMg01-502P12
Chromosome2 (Build37)
Map Location 110,496,269 - 110,496,840
singlet/doubletsinglet
Overlap genenone
Upstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12
Downstream geneMuc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P12.T7 (MSMg01no502_p12.b1)MSMg01-502P12.TJ (MSMg01no502_p12.g1)
ACCAG578196AG578197
length735686
length of high quality
(start - end)
194 (97 - 290)572 (58 - 629)
definitionCHROMAT_FILE: MSMg01no502_p12.b1 PHD_FILE: MSMg01no502_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:07 2005CHROMAT_FILE: MSMg01no502_p12.g1 PHD_FILE: MSMg01no502_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTACCATTTTCAAACAGACCGNGGAATTCNTTGTTACAAAAAACACCCCA
TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACTTTTCCAATG
CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC
ACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTT
TGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT
TTGATATATATGCAGCTAGAGTCAATAGCTCTGGGGTTCCGTTTAGTTCA
TAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTGGCTCCTTGGCTAC
TTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACT
GTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAG
ACAGCTACATCTGCGTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGG
TGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGGCTATGGCAGCC
TCTACATGGTCCATCCTTTCATCTCAGCTCCAAACTCTGTCTCTGTAACC
CCTTCCAAGGGTGTTTTTTTCTTTTTTCTTATCAGTGGCATAATGGTCAC
CCCTTCATTCTTCCCTCTTCTTTAAGACTCATGGGGTTTAGAAATAACAC
CCTTAAATCTTGCGTCTCCCCCTTTCGGGGCCCAG
CCTGGCGGCCGCCTGTTCAAAACATGTAGGTGAACTATAGAATTACACAA
AGAATTCACTTCATACTTCATTTAATTTTCATTTATTTTATATGTTTGTT
CATTTTGTGGTGCTGATAGTTGAGTTTATGTGTTCCACATGCATGCTACG
CACACTACCACTGAGCTACATCCCCAGATCACATGGAAGACGTTAGAGTC
CCAGGCTGTCTGCCTGGCTCAGAACCATAGGGGAAGTAAAGAAGTGAATA
CCCTTGGCAGAAACTATAAAGCAACCATAATCAAGTAAACAGAGCTTTCT
TATTGTTAGAACGGGGTCAGTGTTCTTCCAATAAGTGAAAAGGGTTTCCT
TGATTGAGAATCACTAATATGTATGCAAAGTAGTTTTATTTTGTGTGTGT
GACTAATCTAATATTTCACATTGTATAAATATTTTTGTTTTACTTATTTG
AACAAAATCAAACTGAACAAATAATAGAAATCATAACAATAATGTGTTAT
GTTCTCACTGTGTGTTTATGTGTTTGTTCTCTGTGCATGTTTATGTGTTC
TCTGTGTGATTGTGTTCTCTCTGTGTTTATGTGTTTTCTGTATGTGTGTG
TATGTGTGTGTGTGTTTATGTGCTCTGCATGTGTGTGTTATGTGCTTATG
TGTTCCCCCCGGGGGGTCTGCGGTAAATTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p12.g1 MSMg01no502_p12.g1 CHROMAT_FILE:
MSMg01no502_p12.g1 PHD_FILE: MSMg01no502_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:07 2005
         (572 letters)



>mm_chr2_110496069_110497040
          Length = 972

 Score = 1044 bits (540), Expect = 0.0
 Identities = 564/572 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcatacttcatttaattttcatttattttatatgtttgttcattttgtggtgctgat 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 acttcatacttcatttaattttcatttattttgtatgtttgttcattttgtggtgctgat 260

                                                                       
Query: 61  agttgagtttatgtgttccacatgcatgctacgcacactaccactgagctacatccccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttgagtttatgtgttccacatgcatgctacgcacactaccactgagctacatccccag 320

                                                                       
Query: 121 atcacatggaagacgttagagtcccaggctgtctgcctggctcagaaccataggggaagt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcacgtggaagacgttagagtcccaggctgtctgcctggctcagaaccataggggaagt 380

                                                                       
Query: 181 aaagaagtgaatacccttggcagaaactataaagcaaccataatcaagtaaacagagctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaagtgaatacccttggcagaaactataaagcaaccataatcaagtaaacagagctt 440

                                                                       
Query: 241 tcttattgttagaacggggtcagtgttcttccaataagtgaaaagggtttccttgattga 300
           ||  | |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tcaaagtgttagaacggggtcagtgttctttcaataagtgaaaagggtttccttgattga 500

                                                                       
Query: 301 gaatcactaatatgtatgcaaagtagttttattttgtgtgtgtgactaatctaatatttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatcactaatatgtatgcaaagtagttttattttgtgtgtgtgactaatctaatatttc 560

                                                                       
Query: 361 acattgtataaatatttttgttttacttatttgaacaaaatcaaactgaacaaataatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acattgtataaatatttttgttttacttatttgaacaaaatcaaactgaacaaataatag 620

                                                                       
Query: 421 aaatcataacaataatgtgttatgttctcactgtgtgtttatgtgtttgttctctgtgca 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatcataacaatcatgtgttatgttctcactgtgtgtttatgtgtttgttctctgtgca 680

                                                                       
Query: 481 tgtttatgtgttctctgtgtgattgtgttctctctgtgtttatgtgttttctgtatgtgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtttatgtgttctctgtgtgattgtgttctctctgtgtttatgtgttttctgtatgtgt 740

                                           
Query: 541 gtgtatgtgtgtgtgtgtttatgtgctctgca 572
           |||||||| |||||||||||||||||||||||
Sbjct: 741 gtgtatgtctgtgtgtgtttatgtgctctgca 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)