BAC Information

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BAC

Clone NameMSMg01-503C06
Chromosome2 (Build37)
Map Location 148,625,529 - 148,626,031
singlet/doubletsinglet
Overlap geneCst8
Upstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12
Downstream geneCst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10, EG667048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503C06.T7 (MSMg01no503_c06.b1)MSMg01-503C06.TJ (MSMg01no503_c06.g1)
ACCAG578328AG578329
length714722
length of high quality
(start - end)
350 (86 - 435)503 (85 - 587)
definitionCHROMAT_FILE: MSMg01no503_c06.b1 PHD_FILE: MSMg01no503_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:20 2005CHROMAT_FILE: MSMg01no503_c06.g1 PHD_FILE: MSMg01no503_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCCTCTTCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTC
CAAATCCGCGGAATTCAAGGCCCATTTCTCAAAATGATAAAAGCAATCTA
CAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAA
TCCCACTAAAATCAGGGACTAGACAATGCTGCCCACTTTTTCCCTACCTT
TTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGA
GATCAAGAGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTG
CAGATGATATGATAGTATATATAAGTGACCCTAATAATTCCACCAGAGAA
CTCCTAAACCTGATAAACAGCTTCGGTGAAGCAGCTGGATATAAAATTAA
CTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGATA
AAGAAATTAGGGAAACAACACCCTTTCTCAATAGTCACAAATAATATAAA
ATATCTTGGTGTGACTCTAACTAAGGAAGTGAAAGATCTATATGATAAAA
ACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAA
GATCTCCCATGCCCACGGATTGGCAGGATCAACATTGTAAAAATGGCTAC
CTCGTTCATAGCAATCTACAGATTCAATGTAATCCTTATCAAAATTCCCA
CTCAATTCCCCAAC
TTTTTTTTTACAATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTTTTTGGGTTCAG
CAGCAAGTGTCCTAACCCTCCGAGTTATCCCTTTGGACCTACACATAATC
TTCAGAGGGCTTTTCTCTGTGTTATTTAGTTCGACAGACCTACAGAGGCA
GCAGTGACTGCTCTTCTGAAGCTCAAGCCCTGAGGAAACATAGAGGACAT
CTTTTGTACCTTTTGACTGAGGGACCATGGCAAAACCCTTGTGGCTCTCC
TTGATCCTCTTCATCATTCCAGTGGCCCTGGCAGTTGGTGTGGATCAGTC
CAAGAATGAAGTGAAGGCACAGAACTACTTTGGATCCATTAATATCTCTA
ATGCCAATGTGAAGCAGTGTGTTTGGTTTGCCATGAAAGAATACAACAAG
GAAAGTGAGGACAAATATGTCTTCCTTGTGGACAAGATACTCCATGCCAA
ACTTCAGGTAAGAAAGTTCTATTTCCTCAGCATATTCACATATTGTGGCA
AAGGTGGAGGACAGGTTGTGAAAGTAGACAGATGAGACAAAAGGTGACAG
TACAATTCTAAATGTGTGACTTGCTATGCACAAACCCTCTGAGACAAAAG
CTATATACACACATGCACTTCCTATGCATGCTGTACTCATACTTGCCTGT
CCTATTTTCCTTACCTTTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_c06.g1 MSMg01no503_c06.g1 CHROMAT_FILE:
MSMg01no503_c06.g1 PHD_FILE: MSMg01no503_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:20 2005
         (503 letters)



>mm_chr2_148625329_148626231
          Length = 903

 Score =  928 bits (480), Expect = 0.0
 Identities = 498/504 (98%), Gaps = 2/504 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtttttgggttcagcagcaagtgtcctaaccctccgagttatccctttggacctacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtttttgggttcagcagcaagtgtcctaaccctccgagttatccctttggacctacac 260

                                                                       
Query: 61  ataatcttcagagggcttttctctgtgttatttagttcgacagacctacagaggcagcag 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatcttcagagggcttttctttgtgttatttagttcgacagacctacagaggcagcag 320

                                                                       
Query: 121 tgactgct-cttctgaagctcaagccctgaggaaacatagaggacatcttttgtaccttt 179
           |||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 321 tgactgctact-ctgaagctcaagccccgtggaaacatagaggacatcttttgtaccttt 379

                                                                       
Query: 180 tgactgagggaccatggcaaaacccttgtggctctccttgatcctcttcatcattccagt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgactgagggaccatggcaaaacccttgtggctctccttgatcctcttcatcattccagt 439

                                                                       
Query: 240 ggccctggcagttggtgtggatcagtccaagaatgaagtgaaggcacagaactactttgg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggccctggcagttggtgtggatcagtccaagaatgaagtgaaggcacagaactactttgg 499

                                                                       
Query: 300 atccattaatatctctaatgccaatgtgaagcagtgtgtttggtttgccatgaaagaata 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atccattaatatctctaatgccaatgtgaagcagtgtgtttggtttgccatgaaagaata 559

                                                                       
Query: 360 caacaaggaaagtgaggacaaatatgtcttccttgtggacaagatactccatgccaaact 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caacaaggaaagtgaggacaaatatgtcttccttgtggacaagatactccatgccaaact 619

                                                                       
Query: 420 tcaggtaagaaagttctatttcctcagcatattcacatattgtggcaaaggtggaggaca 479
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 620 tcaggtaagaaagttctatttcctcagcatattcacatattgtgacaaaggtggaggaca 679

                                   
Query: 480 ggttgtgaaagtagacagatgaga 503
           ||||||||||||||||||||||||
Sbjct: 680 ggttgtgaaagtagacagatgaga 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)