Query= MSMg01no503_c16.b1 MSMg01no503_c16.b1 CHROMAT_FILE:
MSMg01no503_c16.b1 PHD_FILE: MSMg01no503_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:22 2005
(570 letters)
>mm_chr2_84605191_84606160
Length = 970
Score = 1064 bits (550), Expect = 0.0
Identities = 565/570 (99%)
Strand = Plus / Minus
Query: 1 tcaacctgtgcgggctgaccgaggacccagatcttcaggtgtctgccatgaaacacgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tcaacctgtgcgggctgaccgaggacccagatcttcaggtgtctgccatgaaacacgaga 711
Query: 61 cagtgctggaactgacagagtcaggggtggaagcagctgcagcctctgccatctcctttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 cagtgctggaactgacagagtcaggggtggaagcagctgcagcctctgccatctcctttg 651
Query: 121 gccgaagcttacccatctttgaggtgcagcgacctttcctcttcctgctctgggaccagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gccgaagcttacccatctttgaggtgcagcgacctttcctcttcctgctctgggaccagc 591
Query: 181 aacacaggttcccagtcttcatgggtcgagtatatgaccccaggggttgagacaggcttg 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 590 aacacaggttcccagtcttcatgggtcgtgtatatgaccccaggggttgagacaggcttg 531
Query: 241 tttaaacattgtcacccaagcttcagctcctccggttatttccttgccactgcctgcccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ggtaaacattgtcacccaagcttcagctcctccggttatttccttgccactgcctgcccg 471
Query: 301 agccacttcaagccttaggaactggcagacggaactgtttccatccaccaacccccatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 470 agccacttcaagccttaggaactggcagacggaactgtttccatccaccaacccccaggg 411
Query: 361 tatcaaccacttttttgcagcttttacggttcaaacctatcaaactctacaaataaaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tatcaaccacttttttgcagcttttacggttcaaacctatcaaactctacaaataaaact 351
Query: 421 tgcagacattttcttctctcactagcctctgtgtactagttccctcagtatcagaaaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgcagacattttcttctctcactagcctctgtgtactagttccctcagtatcagaaaaaa 291
Query: 481 aggaattaccatgcttcctgcaacagctacgagtagtaagctgctctgtacatagtggct 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 290 aggaattaccatgcttcctgcatcagctacgagtagtaagctgctctgtacatagtggct 231
Query: 541 taaagcccctgatgtttattatttcatcca 570
||||||||||||||||||||||||||||||
Sbjct: 230 taaagcccctgatgtttattatttcatcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_c16.g1 MSMg01no503_c16.g1 CHROMAT_FILE:
MSMg01no503_c16.g1 PHD_FILE: MSMg01no503_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:22 2005
(641 letters)
>mm_chr2_84478910_84479950
Length = 1041
Score = 1123 bits (581), Expect = 0.0
Identities = 614/641 (95%), Gaps = 25/641 (3%)
Strand = Plus / Plus
Query: 1 accccgagggatcacaatcatttgggaatccagattttcaaaaatgctacgtagtgattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accccgagggatcacaatcatttgggaatccagattttcaaaaatgctacgtagtgattc 260
Query: 61 tcacagcctgtagaaaatcatgtggtctgttcctgacaatctaaccacaacattcctttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacagcctgtagaaaatcatgtggtctgttcctgacaatctaaccacaacattcctttg 320
Query: 121 acaaaaggggcagtagttagaaaatacatttgggcctgttttactgcccactagactgtt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 acaaaaggggcagtagttagaaaatacatttgggcctgttttactgcccactagacagtt 380
Query: 181 cagatcattgctcagtctggattagaaactctgaaagcatggtcttaagtataagatggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagatcattgctcagtctggattagaaactctgaaagcatggtcttaagtataagatggt 440
Query: 241 tgttttttcataatgttaagtcctgtgtttgtttgctttgtttgttttgcttagactaac 300
||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tgttt-------------------------gtttgctttgtttgttttgcttagactaac 475
Query: 301 tctcaatgcatagcccagtttgcttgttgcttgtctcaaactcacggtgttcctgattac 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 476 tctcaatgcatagcccagtttgcttgttgcttgtctcaaactcacagtgttcctgattac 535
Query: 361 tgggattacagacctatgtcaccaagttcagctttaaatattttttttagactcagtacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgggattacagacctatgtcaccaagttcagctttaaatattttttttagactcagtacc 595
Query: 421 tagaaggaagagtaccttgctaccaggcccactgcctatggacttgtgagctactcactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tagaaggaagagtaccttgctaccaggcccactgcctatggacttgtgagctactcactg 655
Query: 481 gagtacatgcctatttacactgcagaaggaacaatattgtaaatgttttaatttcctgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gagtacatgcctatttacactgcagaaggaacaatattgtaaatgttttaatttcctgca 715
Query: 541 aggaatgaagatctatgccaaattcttaaagactcgctccatattctactataaaagaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aggaatgaagatctatgccaaattcttaaagactcgctccatattctactataaaagaat 775
Query: 601 ccaagtcctaaatcttcttcattcaagcattcatgaaccct 641
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ccaagtcctaaatcttcttcattcaagcattcatgaaccct 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
