Query= MSMg01no503_f06.b1 MSMg01no503_f06.b1 CHROMAT_FILE:
MSMg01no503_f06.b1 PHD_FILE: MSMg01no503_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:34 2005
(518 letters)
>mm_chr2_170151005_170151922
Length = 918
Score = 920 bits (476), Expect = 0.0
Identities = 509/520 (97%), Gaps = 3/520 (0%)
Strand = Plus / Plus
Query: 1 cttctggtgtgtctgaagacagttacagtgtactcatataaataaaataaagaaatt-aa 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 200 cttctggtgtgtctgaagacagttacagtgtactcatataaataaaataaagaaatttaa 259
Query: 60 aaaaatgaatattaggcatagattcctggatcctaagaaagccatcagagctggagccgt 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 260 aaaaatgaatattaggcatagattcctggatcctaagaaagccatcagagctggagccat 319
Query: 120 gtgtgggatcctgcttggtgctggaggggcagagttcatggccccggggtttttacttat 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 gtgtgggatcctgcttggtgctggaggggcagagttcatgcccccggggtttttacttat 379
Query: 180 tatcaaattttcatcgttgttttgaaacagggtcttgtgtggtccaggctggccttgaac 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tatcacattttcatcgttgttttgaaacagggtcttgtgtggtccaggctggccttgaac 439
Query: 240 tcatctttcagcctctacctcacaggttctgggattacttggttcctaaaagtatctccg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcatctttcagcctctacctcacaggttctgggattacttggttcctaaaagtatctccg 499
Query: 300 tcaagctccctggtgttatggctgtgccaaccaggagggtctatacactcgctcaggcag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 500 tcaagctccctggtgttatggctgtgccaaccaggagggtctatacactcgctcaggtag 559
Query: 360 agggagaagatccgaatctctgacagggactgctgcctctcggggcaaatggagcgaagg 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 560 agggagaagatccgaatctctgacagggactgctgcctctcggggcaaatggagtgaagg 619
Query: 420 acagcggcagaaggatttaggaaagatggatgggagagtggaaatgctgcagaagccaga 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 620 acagcggcagaaggatttaggaaagatggacgggagagtggaaatgctgcagaagccaga 679
Query: 480 aaacaaaacaggaatcctgctgtccag-ggggactcaaga 518
||||||| |||||| |||||||||||| |||| |||||||
Sbjct: 680 aaacaaagcaggaagcctgctgtccagtgggg-ctcaaga 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_f06.g1 MSMg01no503_f06.g1 CHROMAT_FILE:
MSMg01no503_f06.g1 PHD_FILE: MSMg01no503_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:34 2005
(493 letters)
>mm_chr2_170332463_170333353
Length = 891
Score = 868 bits (449), Expect = 0.0
Identities = 482/493 (97%), Gaps = 2/493 (0%)
Strand = Plus / Minus
Query: 1 gtccccaaaacaacaaaaagacgggagggggaggggcgggcaaaccattacctaatctgt 60
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 691 gtccccagaacaacaaaaagaccgg-ggggg-ggggcgggcaaaccattacctaatctgt 634
Query: 61 taacattagtggtacccggccctgcaattttgacattgagaaagaagtcattatttagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 taacattagtggtacccggccctgcaattttgacattgagaaagaagtcattatttagaa 574
Query: 121 tcagaagctgttgccggataccagtcccctggagtgatcgatccatccagtggggattcg 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 573 tcagaagctgttgccggataccagttccctggagtgatcgatccatccagtggggatacg 514
Query: 181 ttcagaactatgtgtcttctcgctgagctgggcaccctcctcacagggccgctgctcaca 240
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttcagaactgtgtgtcttctcactgagctgggcaccctcctcacagggccgctgctcaca 454
Query: 241 aacgggtctgatacgcgctgaagtggacagcttagatatttatgatcgtctaaagcactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aacgggtctgatacgcgctgaagtggacagcttagatatttatgatcgtctaaagcactt 394
Query: 301 tggatatcttcctaggtctcactcttacctctccactccagaagtcagacctcagcttac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tggatatcttcctaggtctcactcttacctctccactccagaagtcagacctcagcttac 334
Query: 361 ctttaaagatgaagccaatcagattcgccaacacagtacaggcccagatcaagccaatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctttaaagatgaagccaatcagattcgccaacacagtacaggcccagatcaagccaatca 274
Query: 421 gattcagcggtgcaatgaaagcatccagtaaaaacgtctagggtgagggtgctgcacaga 480
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 273 gattcagcggtgcaatgaaagcatccagtaaaaacctcgagggtgagggtgctgcagaga 214
Query: 481 atggattctcaga 493
|||||||||||||
Sbjct: 213 atggattctcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 891
Length adjustment: 10
Effective length of query: 483
Effective length of database: 881
Effective search space: 425523
Effective search space used: 425523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
