BAC Information

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BAC

Clone NameMSMg01-503H14
Chromosome2 (Build37)
Map Location 73,291,705 - 73,292,254
singlet/doubletsinglet
Overlap geneWipf1
Upstream geneCdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155
Downstream geneChrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503H14.T7 (MSMg01no503_h14.b1)MSMg01-503H14.TJ (MSMg01no503_h14.g1)
ACCAG578582AG578583
length706702
length of high quality
(start - end)
577 (84 - 660)540 (73 - 612)
definitionCHROMAT_FILE: MSMg01no503_h14.b1 PHD_FILE: MSMg01no503_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:45 2005CHROMAT_FILE: MSMg01no503_h14.g1 PHD_FILE: MSMg01no503_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCATTTTTTACTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTC
AGAGGATCCGCGGAATTCTGATTTTTTCCCTGTCAAGTTTGAAGTGATTT
TGTTTGCCAACATAGACAAATAACAGGACATTCAATTATAAATATCATAC
TTTTAAAGTCTTAAGGACATGCTTTTTGATATCCAGTATTTTATTCACCC
TAGTCAGTTTCAACAATGATTACATTTTGCTTCAAGCATATTCAAATCTT
AAAATAACAAATTTGAATTGATAATTATTCAAGATTCTGTCACTGTTTTA
ATGGTGTTTCAAAACAACAACAAAATCTCACAATTACGTATATATTTTAA
ATCTGGTATAAGGCAGAAGAAACAACTACCAACAAGAAAACCACCACTAC
CACCACCATCACCACCACCACCACAACAACAAAACAAAAACTACTTGTAT
ACCCTAAATTCCCTGCAAATATCTGCAAACTTAAGCTTGTGGTACAACAG
TGCTTTAATACTTGAAACAACAGTTTACAGAGATGGAAAATGAATTGACT
TTTTTTATTACATAACAATGTGTATGTTAGCCCTTGCTAAAGATGTCCCT
GATGCCCAGGTGGTTGCTCCGAAGCTCTGTTGAGCCTGCTGCCTCTCCCT
TTATCTCCTGGGCTCTCAGCGCACGCGCTCTCTTCTATGGTCACCTTCAC
CATGGC
NGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTGAAAAAAATCTCAAGTTCCAGGAG
TAATTATTTTTGTAGAGGTGTTGGGGGTGGGAACTGTTAACAGGAGAGAG
GCACAGAGAGCATCAAGTGGCTATATTCTATCCTGAAGGAAGGAGAAACT
TTTTAATTTGGGTGTTTGGTTTTTTGTTTTTTTTTTTCTCATTGCTTCTT
AAGTAAAACCAATCTAGTTTCTTTTTCTATAGCAAAGGAGGAAGGAACAA
ACGAGAAATTAATCATGCAGGAAGTGAATACCACAGAAGGATGCTTGCCT
CTGACTTGGTGTGTCACACTGAACAAGAGGCCAGAGCTTGTCCAACATGG
CTGCCCAGAAACAACCCCTCGCCTGTGTTAAGAAGATAATGCCTTTCTGA
GAGACAGTTCTCTCTTCTGGCGCTTGTCTTGCCTGGTCTCTCTTTCTCTC
TGCCTGAGTCTCTGATCATGCCTTCCTTTTTTAACGGTAAGAAAAACTGT
ATTCAAACTAAATTAATTCCCTTTATCAGCAAAAGGGAAGAACTAAAGGA
CGTTTAATGGGCCATAGTGTGTTGAGATAAAGATGGTTAATTGTTCTGTA
GAACGGCGTGCGATTTATTCCTGCTGCCTGCTATGATGATTGTGAGTGCT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_h14.g1 MSMg01no503_h14.g1 CHROMAT_FILE:
MSMg01no503_h14.g1 PHD_FILE: MSMg01no503_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:45 2005
         (540 letters)



>mm_chr2_73291418_73292354
          Length = 937

 Score =  961 bits (497), Expect = 0.0
 Identities = 532/553 (96%), Gaps = 16/553 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgaaaaaaatctcaagttccaggagtaattatttttgtagaggtgttgggggtggga 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 837 ttttgaaaaaaatctcaagttccaggagtaattatttttgtagagatgttgggggtggga 778

                                                                       
Query: 61  actgttaacaggagagaggcacagaga-------------gcatcaagtggctatattct 107
           |||||||||||||||||||||||||||             ||||||||||||||||||||
Sbjct: 777 actgttaacaggagagaggcacagagatccacttacctctgcatcaagtggctatattct 718

                                                                       
Query: 108 atcctgaaggaaggagaaactttttaatttgggtgtttggttttttgtttttttttttct 167
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||
Sbjct: 717 atcctgaaggaaggagaaactttttaatttgggtgtttggtttt---ttttttttttcct 661

                                                                       
Query: 168 cattgcttcttaagtaaaaccaatctagtttctttttctatagcaaaggaggaaggaaca 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cattgcttcttaagtaaaaccaatctagtttctttttctatagcaaaggaggaaggaaca 601

                                                                       
Query: 228 aacgagaaattaatcatgcaggaagtgaataccacagaaggatgcttgcctctgacttgg 287
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aacgagaaattaatcaggcaggaagtgaataccacagaaggatgcttgcctctgacttgg 541

                                                                       
Query: 288 tgtgtcacactgaacaagaggccagagcttgtccaacatggctgcccagaaacaacccct 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgtgtcacactgaacaagaggccagagcttgtccaacatggctgcccagaaacaacccct 481

                                                                       
Query: 348 cgcctgtgttaagaagataatgcctttctgagagacagttctctcttctggcgcttgtct 407
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cgcctgtgctaagaagataatgcctttctgagagacagttctctcttctggcgcttgtct 421

                                                                       
Query: 408 tgcctggtctctctttctctctgcctgagtctctgatcatgccttccttttttaacggta 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgcctggtctctctttctctctgcctgagtctctgatcatgccttccttttttaacggta 361

                                                                       
Query: 468 agaaaaactgtattcaaactaaattaattccctttatcagcaaaagggaagaactaaagg 527
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 360 agaaaaactgtattcaaactaaattaattccctttatcagcaaaagggaagaactaaatg 301

                        
Query: 528 acgtttaatgggc 540
           |||||||||||||
Sbjct: 300 acgtttaatgggc 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 937
Length adjustment: 10
Effective length of query: 530
Effective length of database: 927
Effective search space:   491310
Effective search space used:   491310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)