CCCCCNNNNNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGT
TATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGAT
ATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGT
TGGTGGTCTTTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTT
GGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCC
ATTGCTGTTCTGTTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCT
TTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAA
GTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGA
TCGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATT
GTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGA
AGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTA
TTCCATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTAT
CACAATTGCCCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAG
AGGTTCTTTTATCCTTGAGAAGAGTTTTTG

NTTTATTTTTACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACTGGCTAAACCC
AGATAGAGGGATAGCACGGTCATAAACTTATATTGGTTACTGTTTACAGA
GGGCAGGGGAATCATAAACACTAGTATTTCATTGTTTTCTTGTTACTGGG
TTTTCTTCCTTTGGTTGTTTTTGCTTGTTTGTTTGTTTCTTTTGCTTTGT
CTTTGCATAGTATGAAATGTTTATTTTTTTAGATATGTAGACCAAAGTCA
ATATGATCAATTTTCCTAAGGAAAACAGGAGAGGGTATAGGTTTAACACA
ACATTATTGCAGGCAATTAATATTTTCTAATGTAAGCCAGCAAAGCCGGT
ACAAAATTTAGAGATATAGAAAAACTCAATTGTAGCCACTATACTTTGTT
TTTAAAAAGGATCAAACTATGTATTTCCTTCCTTGGTACATAATCTCACC
ATATAGCTTTGAATGGAACTCACTATGTAAGTCAGACTGGCTTGGAAGTT
ATGGCAATCCTCCTGCTTCTGCCTCCTGAGTGCTAGCATTCTAAGCAGGC
ATCACCACATCTGGTTCAGATCTTTTGTTTCAATGCCTTACATCCTCTAG
CTGGGAACACAGTGATTCTACTCCCTGCTTGGGCTGTTTGTGGCTCAAGT
GTACAGCACTTACCTCAAGACTCTGGGTTTTATGCACAGTATTGTTGA

Query= MSMg01no503_k23.g1 MSMg01no503_k23.g1 CHROMAT_FILE:
MSMg01no503_k23.g1 PHD_FILE: MSMg01no503_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:02 2005
         (606 letters)



>mm_chr2_78259328_78260333
          Length = 1006

 Score =  723 bits (374), Expect = 0.0
 Identities = 392/398 (98%), Gaps = 2/398 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactggctaaacccagatagagggatagcacggtcataaacttatattggttactgttt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 atactggctaaacccagatagagggatagcatggtcataaacttatattggttactgttt 260

                                                                       
Query: 61  acagagggcaggggaatcataaacactagtatttcattgttttcttgttactgggttttc 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 acagagggcaggggaatcataaacattagtatttcattgttttcttgttactgggttttc 320

                                                                       
Query: 121 ttcctttggttgtttttgcttgtttgtttgtttcttttgctttgtctttgcatagtatga 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ttcctttggttgtttttgcttgtttgtttgtttgttttgctttgtctttgcatagtatga 380

                                                                       
Query: 181 aatgtttatttttttagatatgtagaccaaagtcaatatgatcaattttcctaaggaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtttatttttttagatatgtagaccaaagtcaatatgatcaattttcctaaggaaaa 440

                                                                       
Query: 241 caggagagggtataggtttaacacaacattattgcaggcaattaatattttctaatgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 caggagagggtataggtttaacacaacattattgcaggcaattaaaattttctaatgtaa 500

                                                                       
Query: 301 gccagcaaagccggtacaaaatttagagatatagaaaaactcaattgtagccactatact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccagcaaagccggtacaaaatttagagatatagaaaaactcaattgtagccactatact 560

                                                 
Query: 361 ttgtttttaaaaaggat-caaactatgtatttccttcc 397
           ||||||||||||||| | ||||||||||||||||||||
Sbjct: 561 ttgtttttaaaaagg-tgcaaactatgtatttccttcc 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)