Query= MSMg01no504_d15.b1 MSMg01no504_d15.b1 CHROMAT_FILE:
MSMg01no504_d15.b1 PHD_FILE: MSMg01no504_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:46 2005
(645 letters)
>mm_chr2_173796231_173797276
Length = 1046
Score = 1077 bits (557), Expect = 0.0
Identities = 628/675 (93%), Gaps = 38/675 (5%)
Strand = Plus / Plus
Query: 5 gaattctctctgtgcctaggtgtgacacactgacaggtgtgggagaaagtcattaagaag 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gaattctctctgagcataggtgtgacacactgacaggtgtgggagaaagtcattaagaag 235
Query: 65 ggcagagggtaggtgtgtgcctcaagggaatgagcaaaaaaaaaaaaaaaaaccggtcct 124
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 236 ggcagagggcaggtgtgtgcctcaagggaatgagcaaaaaaaaaaaaa----ccggtcct 291
Query: 125 accagatgaaaaggtactaatactggctcatcagaggagtggcttcatactgacagaacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 accagatgaaaaggtactaatactggctcatcagaggagtggcttcatactgacagaacc 351
Query: 185 acagtttggaaacttcccccaaa---------------------------------agtt 211
||||||||||||||||||||||| ||||
Sbjct: 352 acagtttggaaacttcccccaaagaaagggcagttgacctggagctgaagaacaaaagtt 411
Query: 212 cttgaggcagagagagcaggaaatgcctttcaaacagaggaaacattgggtacaatgtcc 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 412 cttgaggcagagagagcaggaaatgcctttcaaacagaggaaacattgggtacaacgtcc 471
Query: 272 acagggtgaaggcagaggggaaggaggaagaggaggagaaggaagaggaggaggaggagg 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 acagggtgaaggcagaggggaaggaggaagaggaggagaaggaagaggaggaggaggagg 531
Query: 332 aggatcatcatgtgactctctctcttagggagagtagtgtacagaccttcttccactaag 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aggatcatcatgtgactctctctcttagggagagtagtgtacagaccttcttccactaag 591
Query: 392 aacaataaggtttgtaacaagtgttttaaacatgacatgattttaatttatgaaagatta 451
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aacaataaggtttgtaacaaatgttttaaacatgacatgattttaatttatgaaagatta 651
Query: 452 atttggcaaataacaggggccaaatacaataactaggaaaccaggcaaattttgttaaat 511
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 652 atttggcaaataacaggggccaaatacaataactaggaaaccaggcaaattttgttaagt 711
Query: 512 aattgtccatcattggatatgacttagcctgggcctctctgagtacaaagaaataggctg 571
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aattgtctatcattggatatgacttagcctgggcctctctgagtacaaagaaataggctg 771
Query: 572 ggaggctcatagccacccagatcttctgcctggagcccctttacc-atccagtgagtaaa 630
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 772 ggaggctcatagccacccagatcttctgcctggagcccctttacccatccagggagtaaa 831
Query: 631 gaagggggtgcagtg 645
||||||||| |||||
Sbjct: 832 gaagggggtacagtg 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_d15.g1 MSMg01no504_d15.g1 CHROMAT_FILE:
MSMg01no504_d15.g1 PHD_FILE: MSMg01no504_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:46 2005
(597 letters)
>mm_chr2_173940940_173941938
Length = 999
Score = 1131 bits (585), Expect = 0.0
Identities = 595/599 (99%), Gaps = 2/599 (0%)
Strand = Plus / Minus
Query: 1 aataaaagagaattatttgctattggggttatttttaaacttgtattattagttccattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 aataaaagagaattatttgctattggggttatttttaaacttgtattattagttccattt 893
Query: 61 cctgagtagtcctgaaaataattgtgttgggtagaagaggaaggattttaaataaaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 cctgagtagtcctgaaaataattgtgttgggtagaagaggaaggattttaaataaaacaa 833
Query: 121 tcgcccactcctgatactaaatgcactaggtacttgaacgtgccagtctgaattgtaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 832 tcgcccactcctgatactaaatgcactaggtacttgaacgtgccagtctgaattgcaccc 773
Query: 181 tgaaacccacatcttacctttcctttgatgctgagaccgccggtgtcatagacgatgccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tgaaacccacatcttacctttcctttgatgctgagaccgccggtgtcatagacgatgccc 713
Query: 241 ttgcccacccaggcaatggtctgtgtggccccatcaggggtgtggctaaggatggccaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ttgcccacccaggcaatggtctgtgtggccccatcaggggtgtggctaaggatggccaga 653
Query: 301 gcgggtggatggagggcagctttgccaaccccatagattcctgtgtagggaaaaggaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gcgggtggatggagggcagctttgccaaccccatagattcctgtgtagggaaaaggaaga 593
Query: 361 agtgaggtgcccatcgcactggtggagacgtccagaggccctgcagactctggtgctggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 agtgaggtgcccatcgcactggtggagacgtccagaggccctgcagactctggtgctggc 533
Query: 421 actagctggcccatacctctcctgcatagcaacctcaatagatctcccttcccactcctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 actagctggcccatacctctcctgcatagcaacctcaatagatctcccttcccactcctg 473
Query: 481 ctaggagccagtgtgggatgggagaacacagatccattccaacatctatgactgcaaagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctaggagccagtgtgggatgggagaacacagatccattccaacatctatgactgcaaagt 413
Query: 541 attgttaggcaacaaaactcgctgagggg--aaaaaaaacgtggcatggtgcctatggg 597
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 412 attgttaggcaacaaaactcgctgaggggaaaaaaaaaacgtggcacggtgcctatggg 354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 999
Length adjustment: 10
Effective length of query: 587
Effective length of database: 989
Effective search space: 580543
Effective search space used: 580543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
