Query= MSMg01no504_g08.b1 MSMg01no504_g08.b1 CHROMAT_FILE:
MSMg01no504_g08.b1 PHD_FILE: MSMg01no504_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:59 2005
(569 letters)
>mm_chr2_78704180_78705148
Length = 969
Score = 1058 bits (547), Expect = 0.0
Identities = 567/581 (97%), Gaps = 12/581 (2%)
Strand = Plus / Minus
Query: 1 cagtgagcacctcaaggagtgaacgcaacatgaagaggagctattgtaaggaaatgtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 cagtgagcacctcaaggagtgaacgcaacatgaagaggagctattgtaaggaaatgtgtt 849
Query: 61 ttacttatcagggggaaaaaatgtaacgtgctaataggagaaaaggtggggagacgggga 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 848 ttacttatcagggggaaaaaatgaaacgtgctaataggagaaaaggtggggagacgggga 789
Query: 121 agaaagaggagaaaggggaagagaagcaggaagggaaagaaaaggatgagaaagaatggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 agaaagaggagaaaggggaagagaagcaggaagggaaagaaaaggatgagaaagaatggg 729
Query: 181 gaacgtacaggattggggaggaaagggaactattccaggatgtgacagtgcaggtgcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gaacgtacaggattggggaggaaagggaactattccaggatgtgacagtgcaggtgcctg 669
Query: 241 gtagacaaagggcgaaacagacaaaaaccctgaactgggatacctcttt----------- 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gtagacaaagggcgaaacagacaaaaaccctgaactgggatacctcttttaaaaaaaaaa 609
Query: 290 -aaaaaaaaaaaaaaaaaggctcatgattaaattctggcaagttgatttttttaagttcc 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aaaaaaaaaaaaaaaaaaggctcatgattaaattctggcaagttgatttttttaagttcc 549
Query: 349 ctttgtccattttcagaggtgataaaagttatttagaaaaacagttggacaagggtgtag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctttgtccattttcagaggtgataaaagttatttagaaaaacagttggacaagggtgtag 489
Query: 409 tttttctgggtcttagtatagggccctggctggcctggaactcacaaaggtctgcctgct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tttttctgggtcttagtatagggccctggctggcctggaactcacaaaggtctgcctgct 429
Query: 469 tcagcctcctgggtactgagtgaggaggtctgtaccacctcgtccagctcagtttggggg 528
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 428 tcagcctcctgggtactgagtgaggaggtctgtaccgcctcgtccagctcagtttggggg 369
Query: 529 gatttaacggaagccttaactgtactcatcatccctttcaa 569
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gatttaacggaagccttaactgtactcatcatccctttcaa 328
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_g08.g1 MSMg01no504_g08.g1 CHROMAT_FILE:
MSMg01no504_g08.g1 PHD_FILE: MSMg01no504_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:59 2005
(481 letters)
>mm_chr2_78568092_78568973
Length = 882
Score = 818 bits (423), Expect = 0.0
Identities = 470/491 (95%), Gaps = 11/491 (2%)
Strand = Plus / Plus
Query: 1 ttctttgtctgcaggtgtgaccctttgaaatctgccctttccatgttagctgtgctgtca 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 193 ttctttgtctgcaggtgtgaccctttgaaatctgcccttcccatgttagctgtgctgtca 252
Query: 61 ttgtttatggctcctttaggcagccatattgttgaagtgtgataggacaggaaaactact 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 253 ttgtttatggctcctttaggcagccatattgttgaagtgtcataggacaggaaaactact 312
Query: 121 actcccatttt-tttcatttatttttttattctaaagaaatatcaaaaggcagaggcctc 179
||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 313 actcccattttattt-atttatttttttattctaaagaaatatcaaaaggcaaaggcctc 371
Query: 180 agttcatgcagtgaagccatggtgtttgtgaaatgcaatactggtttgtgccagacttag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agttcatgcagtgaagccatggtgtttgtgaaatgcaatactggtttgtgccagacttag 431
Query: 240 ttctgtgtttctcactagattaaaaaaaaaaaat---------cagagggtaagacatct 290
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 432 ttctgtgtttctcactagattaaaaaaaaaaaaaacaaaaaaacagagggtaagacatct 491
Query: 291 gataaaactagaacttgggataactattccttattattttctcagaaatgctaattttta 350
|||||| |||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gataaagctaggacctaggataactattccttattattttctcagaaatgctaattttta 551
Query: 351 gataaatgatttcagagcattggaggaactacaggaactgccttaaataatttgaagata 410
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gataaatgattccagagcattggaggaactacaggaactgccttaaataatttgaagata 611
Query: 411 attgtatagctttaatggccaagctagatatagggcaaatatatgaaaacctggactaga 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 612 attgtatagctttaatggccaagctagatatagggcaaatatatgaaaacctggaataga 671
Query: 471 ctaatttttta 481
|||||||||||
Sbjct: 672 ctaatttttta 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space: 410712
Effective search space used: 410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
