Query= MSMg01no504_n16.b1 MSMg01no504_n16.b1 CHROMAT_FILE:
MSMg01no504_n16.b1 PHD_FILE: MSMg01no504_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:36 2005
(660 letters)
>mm_chr2_164762438_164763497
Length = 1060
Score = 1201 bits (621), Expect = 0.0
Identities = 647/657 (98%), Gaps = 4/657 (0%)
Strand = Plus / Plus
Query: 5 gaattctggttttccc--gagttaggcccatcgcccaatgcctgggcactgaagagttgt 62
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggttt--ccaggagttaggcccatcgcccaatgcctgggcactgaagagttgt 262
Query: 63 acgaaggctaggctcctgaactgcagtaggaggtagaagaggagataggaggtttagagg 122
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 263 aggaaggctaggctcctgaactgcagtaggaggtagaagaggagttaggaggtttagagg 322
Query: 123 tgggtcgtctggatcagcttgcgggccaactgttctctctgggagccagctcatcctggg 182
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgggtcgtctggatcggcttgcgggccaactgttctctctgggagccagctcatcctggg 382
Query: 183 aggggccgtcccagtctagacctagaagcttagatgtggaggcattcatacaatcaaact 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggggccgtcccagtctagacctagaagcttagatgtggaggcattcatacaatcaaact 442
Query: 243 ataaaagacacagcatgtccagaaatgtaagtgttaccacctcgtgactactcagtgtca 302
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 443 ataaaagacacagcatgtccagaaacgtaagtgaaaccacctcgtgactactcagtgtca 502
Query: 303 ccgagctggccctgtgccttctatccaaactcctgacccacaaactagtgagataccgtc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccgagctggccctgtgccttctatccaaactcctgacccacaaactagtgagataccgtc 562
Query: 363 aaaagaaatggtgttgttatgaaacgtacctggctttgcctgtttggtttttgagcaggg 422
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Sbjct: 563 aaaagaaatggtgttgttatgaaacgtacctggctttgcctgtttggtttttgagcaggg 622
Query: 423 gcgtccaggtactctagctggtttgacctcctaggatcaacccatccttcttgcaccagc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcgtccaggtactctagctggtttgacctcctaggatcaacccatccttcttgcaccagc 682
Query: 483 ttccccagtgctgagatttctaagcaagcaccatcacgcggtttttagttttgagggcac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttccccagtgctgagatttctaagcaagcaccatcacgcggtttttagttttgagggcac 742
Query: 543 tttttataactcgagcgttaatagttccttcccaacttcagaagggcctgatgaagacct 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tttttataactcgagcgttaatagttccttcccaacttcagaagggcctgatgaagacct 802
Query: 603 gattcctctcgccacagagtaaagttagaacacacacacacacacacacacacacac 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gattcctctcgccacagagtaaagttagaacacacacacacacacacacacacacac 859
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 631 aacacacacacacacacacacacacacaca 660
||||||||||||||||||||||||||||||
Sbjct: 78 aacacacacacacacacacacacacacaca 49
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 632 acacacacacacacacacacacacacaca 660
|||||||||||||||||||||||||||||
Sbjct: 65 acacacacacacacacacacacacacaca 37
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 632 acacacacacacacacacacacacacaca 660
|||||||||||||||||||||||||||||
Sbjct: 67 acacacacacacacacacacacacacaca 39
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 632 acacacacacacacacacacacacacaca 660
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Sbjct: 69 acacacacacacacacacacacacacaca 41
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 632 acacacacacacacacacacacacacaca 660
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Sbjct: 71 acacacacacacacacacacacacacaca 43
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 632 acacacacacacacacacacacacacaca 660
|||||||||||||||||||||||||||||
Sbjct: 73 acacacacacacacacacacacacacaca 45
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 632 acacacacacacacacacacacacacaca 660
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Sbjct: 75 acacacacacacacacacacacacacaca 47
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 632 acacacacacacacacacacacacacac 659
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Sbjct: 63 acacacacacacacacacacacacacac 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 9
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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