Query= MSMg01no505_a14.b1 MSMg01no505_a14.b1 CHROMAT_FILE:
MSMg01no505_a14.b1 PHD_FILE: MSMg01no505_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:51 2005
(684 letters)
>mm_chr2_47201642_47202730
Length = 1089
Score = 1210 bits (626), Expect = 0.0
Identities = 670/687 (97%), Gaps = 5/687 (0%)
Strand = Plus / Plus
Query: 3 cttgataccatgggtattgtcttggtgcataattgaaataaataggaagtaattctt--- 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cttgataccatgggtattgtcttggtgcataattgaaataaataggaagtaattcttact 262
Query: 60 -cagtttagagagtaaagaaatgtatcttgagaagcaagaaaaaaaa-tgattaattggt 117
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 263 tcagtttagagagtaaagaaatgtatcttgagaagcaagaaaaaaaaatgattaattggt 322
Query: 118 tgaaagacagagaagagacatttcggtgaatgcaaagtaaatgagctagaagcttaacac 177
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaaagacagagaagagacatttcagtgaatgcaaagtaaatgagctagaagcttaacac 382
Query: 178 attttccaagaaaaatttggtagtacttattacacaacatcctttaatatactgtcttcc 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 attttccaagaaaaatttggtagtacttattacacaacatcctttaatatactgtctttc 442
Query: 238 aacccatttgtgtatgttctaatgaagtgatcatgaccaaatgaatctataattatatat 297
|||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 443 aacccatttgtgtatgcactaatgaagtggtcatgaccaaatgaatctgtaattatatat 502
Query: 298 gctgtaaagtgtcagctttagttttcatacacagtaggtgtatcaccacataaataattc 357
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 503 gctgtaaagtgtcagctttagttttcatacacagtaggtgtattaccacataaataattc 562
Query: 358 agtaaatgtaacactgtatcacactgtagggctaccataaaaacatagcattgtctgggg 417
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 563 agtaaatgtaacactgtatcacactgtagggttaccataacaacatagcattgtctgggg 622
Query: 418 agtttccatatctggttctagagttctagaccaagatgtcaggagaaagtttttcttgag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agtttccatatctggttctagagttctagaccaagatgtcaggagaaagtttttcttgag 682
Query: 478 tattctctacttggcttgataatagctgctttcttgctaagtcctcttatgcctttctct 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tattctctacttggcttgataatagctgctttcttgctaagtcctcttatgcctttctct 742
Query: 538 ccgtgccgagacacctctgagtctcctttttatgagtacactacacatcctggattaggc 597
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 743 ctgtgccgagacacctctgagtctcctttttatgagtacaccacacatcctggattaggc 802
Query: 598 tttcacatatatgaggcgatttttctttaattacttctttnaagacttcatatcaaaata 657
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 803 tttcacatatatgaggcgatttttctttaattacttctttaaagacttcatatcaaaata 862
Query: 658 tactaaaactcaagaggatggctttgc 684
|||||||||||||||||||||||||||
Sbjct: 863 tactaaaactcaagaggatggctttgc 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1089
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1079
Effective search space: 727246
Effective search space used: 727246
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_a14.g1 MSMg01no505_a14.g1 CHROMAT_FILE:
MSMg01no505_a14.g1 PHD_FILE: MSMg01no505_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:51 2005
(655 letters)
>mm_chr2_47336439_47337492
Length = 1054
Score = 1205 bits (623), Expect = 0.0
Identities = 647/655 (98%), Gaps = 1/655 (0%)
Strand = Plus / Minus
Query: 1 caaatgctgggaagaaaaggagtgtgccacaactacctggctattaaatattttaattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 caaatgctgggaagaaaaggagtgtgccacaactacctggctattaaatattttaattaa 862
Query: 61 aatattacattgctttttatcattatcttttgaaacattaaaatactttatgtctacttt 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aatattacattgatttttatcattatcttttgaaacattaaaatactttatgtctacttt 802
Query: 121 acaaagacaatatgtgggttctatttgtgagtaactctgtaagtatttaaaaatattatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acaaagacaatatgtgggttctatttgtgagtaactctgtaagtatttaaaaatattatg 742
Query: 181 cattttttgtatcttaacaaaccttcatatatcaattgtaggtaacatatggctaccatt 240
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 cattttttgtatcttaacaaaacttcatacatcaattgtaggtaacatatggctaccatt 682
Query: 241 gcttgtattctattggtctggaaatatttaagatatggttgagaattgttctatgatata 300
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcttgaattttattggtctggaaatatttaagatatggttgagaattgttctatgatata 622
Query: 301 ataaaatcattcaagtccacataatttattaagttaatagacatatttttttaaaaaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 ataaaatcattcaagtccacataatttattaagttaatagacatatttttt-aaaaaata 563
Query: 361 tcattagattagactgatttcacatactcacaaacctgcagtgacatttttctaaatctc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 562 tcattagattagactgatttcacatactcacaaacctgcagtgacatttttctagatctc 503
Query: 421 gtgttactgacatctttagtcactttgacatgtcatcacttttgactaaccgatgctaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtgttactgacatctttagtcactttgacatgtcatcacttttgactaaccgatgctaat 443
Query: 481 taattactgtgaacgaaaacacatactgaattttacttttggttgtactgtttgtgattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taattactgtgaacgaaaacacatactgaattttacttttggttgtactgtttgtgattt 383
Query: 541 taggaaatgcataatatttacacgcaacaatacagcacacacacagtaatactccactcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taggaaatgcataatatttacacgcaacaatacagcacacacacagtaatactccactcc 323
Query: 601 tatttatcttttgcactacatccaattagttctttgatcccctgattattttatt 655
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tatttatcctttgcactacatccaattagttctttgatcccctgattattttatt 268
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1054
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1044
Effective search space: 673380
Effective search space used: 673380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
