Query= MSMg01no505_b09.b1 MSMg01no505_b09.b1 CHROMAT_FILE:
MSMg01no505_b09.b1 PHD_FILE: MSMg01no505_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:55 2005
(669 letters)
>mm_chr2_59343650_59344714
Length = 1065
Score = 1091 bits (564), Expect = 0.0
Identities = 646/684 (94%), Gaps = 20/684 (2%)
Strand = Plus / Minus
Query: 1 accatgcctgcctggatgctgccatgctcttaccttgataataatggactgaacctctga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 963 accatgcctgcctggatgctgccatgctcttaccttgatgataatggactgaacctctga 904
Query: 61 acctgtaagccagctccaattaaatgttgtccttgtaagacttgccttggtcatggtgtc 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 acctgtaaaccagctccaattaaatgttgtccttgtaagacttgccttggtcatggtgtc 844
Query: 121 tgttcacagcagtaaacc----ctaagacgtccttcatctatggacagagagaacgatgc 176
|||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||
Sbjct: 843 tgttcacagcagtaaaccctgactaagatgtccttcatctctggacagagagaacgatgc 784
Query: 177 tcttcctcttgtctcacaccccttgggtgacaggaccctcttgtcatttctcttatgcac 236
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ccttcctcttgtctcataccccttgggtgacaggaccctcttgtcatttctcttatgcac 724
Query: 237 cccatgttcctcccttcagacccaaatccttggcacccccctggattctttacattgagc 296
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 723 cccatgttcttcccttcagacccaaatccttggcatccccctggattctttacattgagc 664
Query: 297 ttcatcctttgctgttca-----------tctcaggctggagcttctactgtatgctcac 345
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 663 ttcatcctttgctgttcatctcttagcattctcaggctggagcttctactgtatgctcac 604
Query: 346 tactcttccttaagtagctttgatgagtcttagcagtcactttatcctgaaggtttctgc 405
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 603 tact----cttaagtagctttgatgagtcttagcagtcactttatcttgaaggtttctgc 548
Query: 406 tgcgggagacatgtgtgattgcatccatttgacaatggtcacagagggtaagtggcttgt 465
||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| ||
Sbjct: 547 tgcgggagacatgtgtgattgcatccatttgacgacggtcacagagggtaagtagctagt 488
Query: 466 ttaaggtttcagaaccagcaagggacagaagcagaaccctgtctcctaaatcttagaatt 525
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttaaggttttagaaccagcaagggacagaagcagaaccctgtctcctaaatcttagaatt 428
Query: 526 tcctgacattggctcagagtactgggagctgggctaagccagggtggaatggttaggact 585
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 427 tcctgacattggctcagagtactgggaactgggctaagccagggtggagtggttaggact 368
Query: 586 attttatggatgcatgctgatattgacggaaagcttgatattgcctcaaattaattttct 645
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 367 attttatggatgcatgttgatattgactgaaagcttgatattgcctcaaattaattttct 308
Query: 646 tttcctttttaaaaaaaactttgt 669
|||||||||| |||||||||||||
Sbjct: 307 tttccttttt-aaaaaaactttgt 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1065
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1055
Effective search space: 695245
Effective search space used: 695245
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_b09.g1 MSMg01no505_b09.g1 CHROMAT_FILE:
MSMg01no505_b09.g1 PHD_FILE: MSMg01no505_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:55 2005
(289 letters)
>mm_chr2_59232231_59232919
Length = 689
Score = 482 bits (249), Expect = e-140
Identities = 279/289 (96%)
Strand = Plus / Plus
Query: 1 catcaaacatagtttggaaaactatgaagagagcaaaatgtattatgactcaaccatatt 60
||||||||||||||| |||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 201 catcaaacatagtttagaaaactatgaagagagcaaaatgtactgtggctcaaccatatt 260
Query: 61 ctttccacttaatattccaaaatttcttttcttaaaaagaagtgagaccggccagtggtg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttccacttaatattccaaaatttcttttcttaaaaagaagtgagaccggccagtggtg 320
Query: 121 gcacacgcctttaatcccagcatttgagaggcagaggcaggtggatttctaagttcaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacacgcctttaatcccagcatttgagaggcagaggcaggtggatttctaagttcaagg 380
Query: 181 ctagcctggtctacaaagtgagttccacgacagccagggctacacagagaaaccctgccc 240
||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 381 ctagcctggtctacaaagtgagttccaggagagccggggctacacagagaaaccctgccc 440
Query: 241 caaaaaaacaaaaacaacaacaaaagaagaagaagaagaagaagaagaa 289
| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ccaaaaaacaaaaacaaaaacaaaagaagaagaagaagaagaagaagaa 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
