Query= MSMg01no505_g10.b1 MSMg01no505_g10.b1 CHROMAT_FILE:
MSMg01no505_g10.b1 PHD_FILE: MSMg01no505_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:18 2005
(598 letters)
>mm_chr2_159952508_159953515
Length = 1008
Score = 928 bits (480), Expect = 0.0
Identities = 567/616 (92%), Gaps = 36/616 (5%)
Strand = Plus / Plus
Query: 1 agaaccaccacacttgtgccttgggatcctgagctcatcctgaccagaaggctgtgctac 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 197 agaaccaccacacttgtgccttgggatcctgagctcatcctgaccagaaagctgtgctac 256
Query: 61 aaagccctcgagatcagtctctgttcccactgtctttgtcatgccagccctgcttctcaa 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaagccctcaagatcagtctctgttcccactgtctttgtcatgccagccctgcttctcaa 316
Query: 121 tcgctatgtgacacaaaatatgtttcaatctctttctctc---ca-----tctctctctg 172
||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 317 tcgttatgtgacacaaaatatgtttcaatctctttctctctgtctctctgtctctctcta 376
Query: 173 tctctgcctctctgtctctgtctctctcatacacatagagagacagagacagacagacag 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tctctgcctctctgtctctgtctctctcatacacatagagagacagagacagacagacag 436
Query: 233 acagacagactgatttacagacacattccatattcatctccacagctgaaatccacccat 292
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acagacagacaga----cagacacattccatattcatctccacagctgaaatccacccat 492
Query: 293 agtagctgatggctatgatctcagcactgaggagg------taggagggctgctctggtt 346
||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 493 agtagctgatggctatgatctcagcactgaggaggcagcggtaggagggctgctctggtt 552
Query: 347 tcctctc----agagactggctgactgaagctgggagctgggaaactatggcagcatagc 402
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttctctcccttagagactggctgactgaagctgggagctgggaaactatggcagcatagc 612
Query: 403 agagccctgaaggaccctctgcaaactcctgggcttcagtggagtctcagtggaggcaca 462
||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct: 613 agagccctgaaggaccctctgcagactcatgagcttcagtggagtctcagtggaggcaca 672
Query: 463 gggagatgcctccctatggtgctgtctagcctttcaaagagctcctaatgaatcagacac 522
|||| ||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 673 cggag--------------tgctgtctagcctttcaaagaactcctgatgaatcagacac 718
Query: 523 agcatttcctgggagctcatgtgatggcagcactgagccccactctagttcactaacctc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 agcatttcctgggagctcatgtgatggcagcactgagccccactctagttcactaacctc 778
Query: 583 tctcatcttttctacg 598
||||||||||||||||
Sbjct: 779 tctcatcttttctacg 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1008
Length adjustment: 10
Effective length of query: 588
Effective length of database: 998
Effective search space: 586824
Effective search space used: 586824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_g10.g1 MSMg01no505_g10.g1 CHROMAT_FILE:
MSMg01no505_g10.g1 PHD_FILE: MSMg01no505_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:18 2005
(328 letters)
>mm_chr2_160100214_160100941
Length = 728
Score = 588 bits (304), Expect = e-172
Identities = 322/328 (98%)
Strand = Plus / Minus
Query: 1 ctggatgctataggagacggatagggaggtagtagtggatgctgtaagcttttatatgga 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctggatgctataggagacagatagggaggtagtagtggatgctgtaagcttttatatgga 394
Query: 61 tctggtttctgctgtaagaagaagccagtctgtacaagctgcgatacacaagtgatttac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 393 tctggtttctgctgtaagaagaagccagtctgtacaagctgcgatacacaagtggtttac 334
Query: 121 tttaaaagtatccttctagtggctatggagagaaggaagtcagtctgggaagatgtgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 333 tttaaaagtatccttctagtggctatggagagaaggaagtcagtctgggaacatgtgggg 274
Query: 181 aatgccagtgatttggatatgtgcatctctagggagtgatactgatggtttgtaatcaat 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aataccagtgatttggatatgtgcatctctagggagtgatactgatggtttgtaatcaat 214
Query: 241 gaggtggtgtggatggccagaaagctagccatatggcagcccgtattcaagaagtatagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaggtggtgtggatggccagaaagctagccatatggcagcccgtattcaagaagtatagg 154
Query: 301 gccctagactccatattttgatgccaga 328
|||||||||||| |||||||||| ||||
Sbjct: 153 gccctagactccttattttgatggcaga 126
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
