BAC Information

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BAC

Clone NameMSMg01-505H16
Chromosome2 (Build37)
Map Location 127,801,542 - 127,992,771
singlet/doubletdoublet
Overlap geneAcoxl, Bcl2l11
Upstream geneAp4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1
Downstream geneLOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505H16.T7 (MSMg01no505_h16.b1)MSMg01-505H16.TJ (MSMg01no505_h16.g1)
ACCAG580107AG580108
length756750
length of high quality
(start - end)		615 (68 - 682)683 (68 - 750)
definitionCHROMAT_FILE: MSMg01no505_h16.b1 PHD_FILE: MSMg01no505_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:24 2005CHROMAT_FILE: MSMg01no505_h16.g1 PHD_FILE: MSMg01no505_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,801,542 - 127,802,156)(127,992,089 - 127,992,771)
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTTTCTCTTTCTCCATATACAAAATAGTAATAGTCAGGAGT
AAGAGGGCTCCGGACTTAGGAGCTTTTAGTAAAGGTCAAATGGGTGAAGA
TTTGGATGTGCTCAGAATAAAGCACCCGGCGCTCAGTAAATTCGGGCGGC
ATGGTCATTATCCTCAAGATTCCTCAAACTTTCTTCTTTTATCTGAGTGT
TGTGTTTTATTTATTTCAGAATGATTCATAGTTATAGAGTCAACCTTATT
ATACATCAACTGGAGAATAGAGAAAATACGGTACACAGTCTTCAAACTTC
CTCTTCCCCTGTTCTGCCAATTCCCACCCCCTAATGTTTGGGTTTGCTTT
CCCCGTCATCTCGACTGACCCTCCTTAGCTCCTCTCTCTTACCATCCACC
TCCAACCTGCACTTCGTCAACTTTACCACCATCGGCCTCTTGCATGAAAC
CAAAGTCTGAGTTCTCAATGGGACTCTCAAGTTATCTCCTGCTCTAGAGA
AGCTACAGCTCCTTTGTGTGGCCTTGGAATGCCTTCTCTCTGGCACACCC
TGTCCACTTGTCTGTGTCTCTCCTCTGTTGGGTCTACTACTGGACTCTGA
GCTCTATCCCTGGGCTCACAGGCCTCCTGCCAGGCCCCTTACATCAGTGC
CTGCTGCATCTACCCTCCCCCACACACACACTCTTGCTTTCATCCTCTTA
GACAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATACTGTTTGTAGAGAACTTCTTGCAGCCCTTT
TATTCAGCCTTCCTGACAGGTAGGAATGAGTCAGCAGTTCAGTTGCCAAC
AACAGAGGCCAACTTCAGCTAATTGAGCACAAAGAGAACTCGCTGGAGGG
GCGGGCACCTGCCCCACAGACCAAGAGGAAACTGTTGCTGATGGTGGGGT
AGCGGAGCATCATAGCCAAGTAGGGGGCAGCAGGCCTCTGGCAGCCTTTT
GGGTGCTGTTCTCCAGACTGTACTTGTCCCAGATGCAAAGTGCTGGGAAA
GAGCGTTGAATTGGCTCTGAGCCTGTCCTCAGCTGCACCGTGGGCAGGGG
AGACGTTCACAGGCAGAAGCCACACTGGGTACCAGGCACATAAAGAGAGC
TGTATGGGGCTGGATGCCAGACGATGCATATCCCACCCTTCAAATAAGCC
AAGACACTTGGAGGTGTTAAAGGAAGAAAATCCAAGTGTATGGAATCAGC
CAACGCTCCTTAAATCTTTTCCATTTGTGATCATTTGATGTCGGAGAAAC
ATTTACACAACCCAGGGTGTACAAGTATATAATATACATGCACAAATCAT
TTATTGGCAATAAATCATAGAAACGTAAAACAACCTTTGATGCATTTAAG
TTTTTTATTTGTCTTTTTTTGAGACATGGTTTCTCTGGCTGTCCTGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_h16.b1 MSMg01no505_h16.b1 CHROMAT_FILE:
MSMg01no505_h16.b1 PHD_FILE: MSMg01no505_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:24 2005
         (615 letters)



>mm_chr2_127801342_127802356
          Length = 1015

 Score = 1143 bits (591), Expect = 0.0
 Identities = 609/615 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctccatatacaaaatagtaatagtcaggagtaagagggctccggacttaggagctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctccatatacaaaatagtaatagtcaggagtaagagggctccggacttaggagctttt 260

                                                                       
Query: 61  agtaaaggtcaaatgggtgaagatttggatgtgctcagaataaagcacccggcgctcagt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 agtaaaggtcaaatgggtgaagatttggatgtgctcagaataaagcacccggtgctcagt 320

                                                                       
Query: 121 aaattcgggcggcatggtcattatcctcaagattcctcaaactttcttcttttatctgag 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattcgggcggcgtggtcattatcctcaagattcctcaaactttcttcttttatctgag 380

                                                                       
Query: 181 tgttgtgttttatttatttcagaatgattcatagttatagagtcaaccttattatacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttgtgttttatttatttcagaatgattcatagttatagagtcaaccttattatacatc 440

                                                                       
Query: 241 aactggagaatagagaaaatacggtacacagtcttcaaacttcctcttcccctgttctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactggagaatagagaaaatacggtacacagtcttcaaacttcctcttcccctgttctgc 500

                                                                       
Query: 301 caattcccaccccctaatgtttgggtttgctttccccgtcatctcgactgaccctcctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caattcccaccccctaatgtttgggtttgctttccccgtcatctcgactgaccctcctta 560

                                                                       
Query: 361 gctcctctctcttaccatccacctccaacctgcacttcgtcaactttaccaccatcggcc 420
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 561 gctcctctctcttaccatccacctccaacctgcactttgtcaactttaccaccatcagcc 620

                                                                       
Query: 421 tcttgcatgaaaccaaagtctgagttctcaatgggactctcaagttatctcctgctctag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttgcatgaaaccaaagtctgagttctcaatgggactctcaagttatctcctgctctag 680

                                                                       
Query: 481 agaagctacagctcctttgtgtggccttggaatgccttctctctggcacaccctgtccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 agaagctacagctcctttgtgtggccttggaatgccttctctctggcacaccctgcccac 740

                                                                       
Query: 541 ttgtctgtgtctctcctctgttgggtctactactggactctgagctctatccctgggctc 600
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 ttgtctgtgtctctcctctgttgggtctactactggactctaagctctatccctgggctc 800

                          
Query: 601 acaggcctcctgcca 615
           |||||||||||||||
Sbjct: 801 acaggcctcctgcca 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no505_h16.g1 MSMg01no505_h16.g1 CHROMAT_FILE:
MSMg01no505_h16.g1 PHD_FILE: MSMg01no505_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:24 2005
         (683 letters)



>mm_chr2_127991889_127992971
          Length = 1083

 Score = 1274 bits (659), Expect = 0.0
 Identities = 677/683 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactgtttgtagagaacttcttgcagcccttttattcagccttcctgacaggtaggaat 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 883 atactgtttgtagagaacttcttgcaacccttttattcagccttcctgacaggtaggaat 824

                                                                       
Query: 61  gagtcagcagttcagttgccaacaacagaggccaacttcagctaattgagcacaaagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gagtcagcagttcagttgccaacaacagaggccaacttcagctaattgagcacaaagaga 764

                                                                       
Query: 121 actcgctggaggggcgggcacctgccccacagaccaagaggaaactgttgctgatggtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 763 actcgctggaggggcgggcacctgccccacagaccaagaggaaactgttgctgatggcgg 704

                                                                       
Query: 181 ggtagcggagcatcatagccaagtagggggcagcaggcctctggcagccttttgggtgct 240
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 703 tgtagcggagcatcttagccaagtagggggcagcaggcctctggcagccttttggttgct 644

                                                                       
Query: 241 gttctccagactgtacttgtcccagatgcaaagtgctgggaaagagcgttgaattggctc 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gtcctccagactgtacttgtcccagatgcaaagtgctgggaaagagcgttgaattggctc 584

                                                                       
Query: 301 tgagcctgtcctcagctgcaccgtgggcaggggagacgttcacaggcagaagccacactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tgagcctgtcctcagctgcaccgtgggcaggggagacgttcacaggcagaagccacactg 524

                                                                       
Query: 361 ggtaccaggcacataaagagagctgtatggggctggatgccagacgatgcatatcccacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggtaccaggcacataaagagagctgtatggggctggatgccagacgatgcatatcccacc 464

                                                                       
Query: 421 cttcaaataagccaagacacttggaggtgttaaaggaagaaaatccaagtgtatggaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cttcaaataagccaagacacttggaggtgttaaaggaagaaaatccaagtgtatggaatc 404

                                                                       
Query: 481 agccaacgctccttaaatcttttccatttgtgatcatttgatgtcggagaaacatttaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agccaacgctccttaaatcttttccatttgtgatcatttgatgtcggagaaacatttaca 344

                                                                       
Query: 541 caacccagggtgtacaagtatataatatacatgcacaaatcatttattggcaataaatca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 caacccagggtgtacaagtatataatatacatgcacaaatcatttattggcaataaatca 284

                                                                       
Query: 601 tagaaacgtaaaacaacctttgatgcatttaagttttttatttgtctttttttgagacat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tagaaacgtaaaacaacctttgatgcatttaagttttttatttgtctttttttgagacat 224

                                  
Query: 661 ggtttctctggctgtcctggaac 683
           |||||||||||||||||||||||
Sbjct: 223 ggtttctctggctgtcctggaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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