Query= MSMg01no505_i17.b1 MSMg01no505_i17.b1 CHROMAT_FILE:
MSMg01no505_i17.b1 PHD_FILE: MSMg01no505_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:29 2005
(669 letters)
>mm_chr2_139838427_139839495
Length = 1069
Score = 975 bits (504), Expect = 0.0
Identities = 593/638 (92%), Gaps = 24/638 (3%)
Strand = Plus / Minus
Query: 1 cctttaccccattaaaaccccttgctttccagccttggggtcgaatccactgtctcttgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 750 cctttaccccattaaaaccccttgctttccagccttggggtcgaatccactgtctcctgc 691
Query: 61 atgagatacgttttgacccggagctccatcattaaactacttcgtgcatttacatcaaga 120
||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 690 atgagatacatttcgacccggagctccatcattaaactacctcgtgtgtttacatcaaga 631
Query: 121 aggattctcgtgtttctttgggtgctgtctctctcccgagattagagtgggggtccccga 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aggactctcgtgtttctttgggtgctgtctctctcccgagattagagtgggggtccccga 571
Query: 181 aagggggtcttacaggaccttaaatacgatatgggcttcaaaaacaacacttggtatatt 240
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 570 aagggggtcttacaggaccttaaatatgatatgggcttcaataacaacacttggtatatt 511
Query: 241 catgatcttattagagcaatagtgtttttctttaggtttcaaatacaccactagcctcca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 510 catgatcttattagagcaatagtgtttttctttaggtttcaaatacaccactggcctcca 451
Query: 301 attctaggcctttatgctctgtttagcttatagctataaaatattttaaagttaggttta 360
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct: 450 attctaggcctttatgctctgtttagcttatggctatgaaatattttaaagttaggcgta 391
Query: 361 ttcattttaccctatgcctgagcatgttgtctgtatatatgcctgtgcaccgtgtgtact 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttcattttaccctgtgcctgagcatgttgtctgtatatatgcctgtgcaccgtgtgtact 331
Query: 421 tagtgcctgtggagattagaacagggcctcagatcctctggaactggagttgtgagtagt 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tagtgcctgtggagatcagaacagggcctcagatcctctggaactggagttgtgagtagt 271
Query: 481 cgtgagcctccatgttggtgctgggaatctaacctgagtcttcttcaagagcaacagatg 540
|||||||||||||||||||||||||||||||||| ||
Sbjct: 270 cgtgagcctccatgttggtgctgggaatctaacc------------------------tg 235
Query: 541 ctcataagtactgggtcgttgctccagatccccatactttctttcctcatggcctgattt 600
||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 234 ctcgtaagtactgggtcgttgctccagatccccaaacttactttcctcatggcctgattt 175
Query: 601 taacattttttgttcaccttggagatagtgtcatgtag 638
|||||||||||||||| ||||||||| |||||||||||
Sbjct: 174 taacattttttgttcatcttggagatggtgtcatgtag 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_i17.g1 MSMg01no505_i17.g1 CHROMAT_FILE:
MSMg01no505_i17.g1 PHD_FILE: MSMg01no505_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:29 2005
(662 letters)
>mm_chr2_139690297_139691355
Length = 1059
Score = 1176 bits (608), Expect = 0.0
Identities = 646/662 (97%), Gaps = 7/662 (1%)
Strand = Plus / Plus
Query: 1 actcctagtcactcccattctcagggtgtaatagtggggtgatgggcgagcaactaatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 actcctagtcactcccattctcagggtgtaatagtggggtgatgggcgagcaactaatca 264
Query: 61 ggagctgtcacgccatatcaggtgctgaaacgtcacgctgcgggttataaaagcaacgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 ggagctgtcacgccatatcaggtgctgaaacgtcacgctgcgggttataaaagcagcgcc 324
Query: 121 attttcccggtttgggatcttcctgagaagcaagcaataaagctcttgccgcggaagatt 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 attttcccggtttgggatcttcctgagaagcaagcaataaagctcttgccacggaagatt 384
Query: 181 ctggtttgttgcgtctttcttgccggtggagcgggacacaatatttttatatattaaaaa 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 ctggtttgttgcgtctttcttgccggtggagtgggacacaatatttttatatattaaaaa 444
Query: 241 ataatcttgtctggcggtggtggcacacatctttaatcccagcacttgggaggtagagac 300
|||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataatcaggccgggcggtggtggcacacatctttaatcccagcacttgggaggtagagac 504
Query: 301 aggtggatttctgagttcgaggccagcctggtctacagagcgagttccaggacagccagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggtggatttctgagttcgaggccagcctggtctacagagcgagttccaggacagccagg 564
Query: 361 gctacacagagaaaccctgtctcgaaaaaccaatcaatcaatcaatcaataaataaataa 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 565 gctacacagagaaaccctgtctcgaaaaaccaatcaatcaatcaatcaatcaataa---- 620
Query: 421 tcagaatcaacaaaacaacaatctagctgacaacattcccaaattacttttgcattccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagaatcaacaaaacaacaatctagctgacaacattcccaaattacttttgcattccaa 680
Query: 481 atttttaaaatgccaatgtaataagtttgtaaaaaaaaaaaaaaaactagaaaacatgtt 540
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 ttttttaaaatgccaatgtaataagtttgtaaaaaaaaaaaaa---ctagaaaacatgtt 737
Query: 541 tatctcaaagataaaactcagcctgcatgtaagctgtaaaaagaaaatatattgagagct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tatctcaaagataaaactcagcctgcatgtaagctgtaaaaagaaaatatattgagagct 797
Query: 601 gcaggagaggaatactttaccacatatgaaggcagccatgaagtaatagctagttttccc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gcaggagaggaatactttaccacatatgaaggcagccatgaagtaatagctagttttccc 857
Query: 661 aa 662
||
Sbjct: 858 aa 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1059
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1049
Effective search space: 683948
Effective search space used: 683948
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
