Query= MSMg01no505_j13.b1 MSMg01no505_j13.b1 CHROMAT_FILE:
MSMg01no505_j13.b1 PHD_FILE: MSMg01no505_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:32 2005
(603 letters)
>mm_chr2_180558478_180559480
Length = 1003
Score = 1143 bits (591), Expect = 0.0
Identities = 600/603 (99%)
Strand = Plus / Minus
Query: 1 gcaggcagaagacagcatgctagagagcagacatttcattgtatctacaccgtaaaattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gcaggcagaagacagcatgctagagagcagacatttcattgtatctacaccgtaaaattg 744
Query: 61 caactgtgtatccctcagagctgaggtgtgccacctacgtgaactgcaaggcagccacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 caactgtgtatccctcagagctgaggtgtgccacctacgtgaactgcaaggcagccacag 684
Query: 121 ccctgccctctgtgtcctcatcctggaagagggttgctttgtccatctggaaatctctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccctgccctctgtgtcctcatcctggaagagggttgctttgtccatctggaaatctctta 624
Query: 181 gaattccatgtctgtgggaggcagaggagaacgcagagctggaaggtgatatgcggcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaattccatgtctgtgggaggcagaggagaacgcagagctggaaggtgatatgcggcttc 564
Query: 241 tgcctggatactccgccccaccccagacttcctgtgtcttctgtgaagaggtgatgaatc 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgcctggagactccgccccaccccagacttcctgtgtcttctgtgaagaggtgatgaatc 504
Query: 301 cactgagtggcactgaaggtatcacatggggagtcacacggggtatcaggactgtatgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 503 cactgagtggcactgaaggtatcacatggggagtcacacggggtatcaggactgtatatg 444
Query: 361 gcttaacaagagaacctggtcaccagcactggctgagatcaaaggcaaatctttattcag 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 443 gcttaacaagagaacctggtcaccagcactggctgaggtcaaaggcaaatctttattcag 384
Query: 421 ggtacaaactgctggcttgtctccaagagaagggaaatcagccccaccaaaagagctcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggtacaaactgctggcttgtctccaagagaagggaaatcagccccaccaaaagagctcag 324
Query: 481 gctttttatagggtgtttttagtttagtttagttcagtgggtgtgtagcaagagaacatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gctttttatagggtgtttttagtttagtttagttcagtgggtgtgtagcaagagaacatt 264
Query: 541 aaggaaaaaggaactgttacaggcagaaggaactgcagtaagcaacgcttttggggctgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaggaaaaaggaactgttacaggcagaaggaactgcagtaagcaacgcttttggggctgg 204
Query: 601 ggg 603
|||
Sbjct: 203 ggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_j13.g1 MSMg01no505_j13.g1 CHROMAT_FILE:
MSMg01no505_j13.g1 PHD_FILE: MSMg01no505_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:33 2005
(628 letters)
>mm_chr2_180395017_180396047
Length = 1031
Score = 1139 bits (589), Expect = 0.0
Identities = 619/637 (97%), Gaps = 15/637 (2%)
Strand = Plus / Plus
Query: 1 ccttttctccccatgaggatccttgcggtcttcaaattgggctggtgctcctcctcgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ccttttctccccatgaggatccttgcggtcttcaaattgggctggtgctcctcctcgggg 260
Query: 61 cccaccaagataag---gtgagagtcccctgttgtccccatagggaggtggcccatgttg 117
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaccaagataagaaggtgagagtcccctgttgtccccatagggaggtggcccatgttg 320
Query: 118 cccagagaataaggaagggattggtggcttctgtgccccaaatctggcaggtggagggcc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagagaataaggaagggattggtggcttctgtgccccaaatctggcaggtggagggcc 380
Query: 178 tcttggtccatcactattaggaacaaggttctcttctgaataaggagggactggccccct 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttggtccatcactattaggaacaaggttctcttctgaataaggagggactggccccct 440
Query: 238 aggtccttttttt------ctgggaccatgatgacccgacatcccaaaagtgcgtggtgc 291
||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtcct------ggaaaactgggaccatgatgacccgacatcccaaaagtgcgtggtgc 494
Query: 292 aggttcacgctggccaggaaactgaggctgagggccccctcccctctgcccaggttgggg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aggttcacgctggccaggaaactgaggctgagggccccctcccctctgcccaggttgggg 554
Query: 352 gaatgaagtagtactctcaccaggcctaggctgtggctctctgctgtcctccatatcagc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gaatgaagtagtactctcaccaggcctaggctgtggctctctgctgtcctccatatcagc 614
Query: 412 tactgggctgtcactcttcccagcagactgagcacccctggggtcctcatattgggatga 471
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tactgggctgtcattcttcccagcagactgagcacccctggggtcctcatattgggatga 674
Query: 472 gccaagagatgtttcctgagacataaatgtgggccctgagaaaggctccctgcttccaga 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gccaagagatgtttcctgagacataaatgtgggccctgagaaaggctccctgcttccaga 734
Query: 532 actaaaattttgggccttaggttgcaaagggaagctgggtggaaaggtggtgctaggggg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 actaaaattttgggccttaggttgcaaagggaagctgggtggaaaggtggtgctaggggg 794
Query: 592 tgtgggtagcagcactctgcggggtggtgctggcctg 628
|||||||||||||||||||||||| ||||||||||||
Sbjct: 795 tgtgggtagcagcactctgcggggcggtgctggcctg 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1031
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1021
Effective search space: 630978
Effective search space used: 630978
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
