Query= MSMg01no506_a16.b1 MSMg01no506_a16.b1 CHROMAT_FILE:
MSMg01no506_a16.b1 PHD_FILE: MSMg01no506_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:05 2005
(690 letters)
>mm_chr2_109537460_109538551
Length = 1092
Score = 1205 bits (623), Expect = 0.0
Identities = 671/703 (95%), Gaps = 29/703 (4%)
Strand = Plus / Plus
Query: 1 ctggctgttgttcactggaggcagaaggagccatttgaaggataatcacattaagttgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggctgttgttcactggaggcagaaggagccatttgaaggataatcacattaagttgca 260
Query: 61 ttatgataaattttctttattaggatggataacatgcccagatgggcatcagaagtgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatgataaattttctttattaggatggataacatgcccagatgggcatcagaagtgaat 320
Query: 121 gagtagacgtattggttacactctggcctccatttattctgtctagtatggagtaatgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtagacgtattggttacactctggcctccatttattctgtctagtatggagtaatgct 380
Query: 181 aagaagtaaatgatgttggcaaatgaaatccgtttgtcactggcattggggagttaaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaagtaaatgatgttggcaaatgaaatccgtttgtcactggcattggggagttaaccc 440
Query: 241 ttggaaacatcactaaagctttagtactttaaaacttagggaagtgcatccttaaagccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggaaacatcactaaagctttagtactttaaaacttagggaagtgcatccttaaagccc 500
Query: 301 ctccatcttccacttagggatgagattattaatcctaaataattttacacttgatcttag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctccatcttccacttagggatgagattattaatcctaaataattttacacttgatcttag 560
Query: 361 ccaaaaggcctaaaagcaataatcctaagtaattttatatttcaaagaattactaaactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaaaggcctaaaagcaataatcctaagtaattttatatttcaaagaattactaaactt 620
Query: 421 ccatcactctatcacaggaatatgaaaacttcagaaagttatggacccaattactgaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccatcactctatcacaggaatatgaaaacttcagaaagttatggacccaattactgaata 680
Query: 481 atggagtcattgttgatagatt--aaaaaaacatgacgaaactta--a----ca-----a 527
|||||||||||||||||||||| ||||||| ||||||||||| | | || |
Sbjct: 681 atggagtcattgttgatagatttaaaaaaaaaatgacgaaactcagtagttgcatgggta 740
Query: 528 tttgaaaattgttaagggggaagggaatgctatcagatcgataggtagatagatagatag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgaaaattgttaagggggaagggaatgctatcagatcgataggtagatagatagatag 800
Query: 588 atagatagatagatagatagatagatagatagatagatagatagatagatagatgaaaga 647
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 801 atagatagatagatagatagatagatagatagatagat----------------gaaaga 844
Query: 648 aagaataaattacaagcagtatggcaaatttcatttatgtaag 690
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 845 aagaatgaattacaagcagtatggcaaatttcatttatgtaag 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1092
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1082
Effective search space: 735760
Effective search space used: 735760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_a16.g1 MSMg01no506_a16.g1 CHROMAT_FILE:
MSMg01no506_a16.g1 PHD_FILE: MSMg01no506_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:06 2005
(692 letters)
>mm_chr2_109552765_109553856
Length = 1092
Score = 1315 bits (680), Expect = 0.0
Identities = 689/692 (99%)
Strand = Plus / Minus
Query: 1 tctaccttgacatcctagtcttaggcacagctgccaagttccagaggtcctaagtactgc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 755 tctaccttgacatcctagtcttaggcacagctgccaagttccagaggttctaagtactgc 696
Query: 61 cattaacatcgcctcaggcaacctaatgtttcccacaatcaatggaggtttctgaatgtc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 695 cattaacatcgcctcaggcaacctaatgtttcccacaatcaatggaggtttctgaatgcc 636
Query: 121 gaagacccctagcgagacctgttcctacctgcccttctcctttgcctaaacagtacatga 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 635 gaagacccctagcgagacctgttcctacctgcccttctcctttgcctaagcagtacatga 576
Query: 181 ctctaacaaatgagccctagtaccaagcattcctatctcatttgcatatcaaatgtgcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctctaacaaatgagccctagtaccaagcattcctatctcatttgcatatcaaatgtgcat 516
Query: 241 ttctaaatatcctccggaacagctatttttaattatagggcccaactggcagctgacaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttctaaatatcctccggaacagctatttttaattatagggcccaactggcagctgacaat 456
Query: 301 caagaactaaaattgttttaaattaggattttattttcttccaaaatcctggcaggattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 caagaactaaaattgttttaaattaggattttattttcttccaaaatcctggcaggattt 396
Query: 361 gttactattcaccctaaccacgtattttttactaaattcttgtacatggtagacaaatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gttactattcaccctaaccacgtattttttactaaattcttgtacatggtagacaaatat 336
Query: 421 tattaatttcaattagtgtcattatgtgttattgactaattatgtaatgtgtaacctgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tattaatttcaattagtgtcattatgtgttattgactaattatgtaatgtgtaacctgta 276
Query: 481 gcatcacatgaatatcatatttaatgacagatgttcatcaactatatgtaatcatggatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gcatcacatgaatatcatatttaatgacagatgttcatcaactatatgtaatcatggatg 216
Query: 541 gaattttaaaaattattctattttatatgtatagatgttttgtttgcaagtttgtctgtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattttaaaaattattctattttatatgtatagatgttttgtttgcaagtttgtctgtc 156
Query: 601 caagagtacatgcctggtacccatggaggtcagagcagggcatttaattcccttggaagt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 caagagtacatgcctggtacccatggaggtcagagcagggcatttaattcccttggaagt 96
Query: 661 aggaagttccaaggttgtaagacaccatgtgg 692
||||||||||||||||||||||||||||||||
Sbjct: 95 aggaagttccaaggttgtaagacaccatgtgg 64
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
