BAC Information

Click to search

BAC

Clone NameMSMg01-506C09
Chromosome2 (Build37)
Map Location 44,703,233 - 44,844,732
singlet/doubletdoublet
Overlap geneGtdc1, Zeb2
Upstream geneArhgap15
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506C09.T7 (MSMg01no506_c09.b1)MSMg01-506C09.TJ (MSMg01no506_c09.g1)
ACCAG580613AG580614
length748743
length of high quality
(start - end)
248 (81 - 328)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no506_c09.b1 PHD_FILE: MSMg01no506_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:14 2005CHROMAT_FILE: MSMg01no506_c09.g1 PHD_FILE: MSMg01no506_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,703,233 - 44,703,480)(44,844,489 - 44,844,732)
sequence
TTATTACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACGATAGGATC
CGCGGAATTCTAGAAAATTTCCACAAATCAGGTTTGCCATAAAATAATCA
TGATTTTAAAAAAGGTTTGGCTGCCTGACAAAAAGCAAAACATACCTTTA
AAAAAATTTAGCACAAAAATGAAATAATTTAAAACATCAGGTTACCTTTA
AGATATTGGGGACCCTAAAAATGGCTGGTACACTGGGTCGGGTTGACACT
CCTGCTAATGTATCTGTCAAACACCAATTCATCAGCAGCTTGCTTTTATG
ACAATTAATCACATTTATGACACTCTCCTTTCTTACCATACTAGATGCGA
CATACAATGTACTGAAATAAAAGGCGACTTTTGTGCGTATCTAATGGTTT
CCACTGCTGTGTAGAGACACCATGACCCACACAACTCTCATAAAGGAAAA
TATCTAACTGAGGCTGACTAACAAGTTTCAGAGGTTTAGTCCATTATCAT
CATGGTAGAAAGCATATTAGCATCCTAGCAGACTTGATGCTGGAAGAGAG
TTCTACATCTTGATTCACAGGAGGAGAAGACCAGATTATACATTATAACC
CTTCAAAATAAAGGCAAGGGAAGGGACGGCAATGTAAGGGTAGGGATATT
TAACGCTATGTTTTTTTTCCCCTCTTTTTCTCCCCCCCTTCCCACTTTTT
TTTTCCCCCTCCTTTCCCCTCTTTTTTTTCCCCTTTTTCTTTCCCCCG
CCAAACGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGAAAGAGACTTCATGCCA
AGCCACTAATCACCCTGTCGTCTTGTTCTTTCTCCCAGGAAAGAGACCAC
ACCAGTGTCAGATTTGTAAGAAAGCGTTCAAACACAAACACCACCTTATC
GAGCACTCGAGGCTGCACTCGGGCGAGAAGCCCTATCAGTGTGACAAATG
TGGCAAGCGCTTCTCACACTCGGGCTCCTACTCGCAGCACATGAATCACA
GGTACTCCTACTGCAAGCGGGAGGCTTATGAGCGGGAAGCAGCTGAGCGC
GAGGCGCGAGAGAAAGGGCACTTGGAACCCACCGAGCTGCTGATGAACCG
GGCTTACCTGCAGAGCATCACCCCTCAGGGGTACTCTGACTCGGAGGAGA
TGGAGAGCATGCCTAGTGATGGCGAGAGCTAGAATGAGCACGAGAAGGAG
GGCGAGGAGGGTTATGGGAAGCTGCGGAGAAGGGACGGCGACGAGGAGGA
AGAGGAGGAAGAGGAAGAAAGTGAAAATAAAAGTATGGATACTGATCCCG
AAACGATACGGTATGAGGAAGAGACTGGGGATCACTCGATGGACCACAGT
TCATAGGATGGGAAAATGGAAACCAAATCAGACCACGAGGAAGACAATAT
GGAAGATGGCCCGGAATATACTACCGCATTTTTAGCTTCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_c09.b1 MSMg01no506_c09.b1 CHROMAT_FILE:
MSMg01no506_c09.b1 PHD_FILE: MSMg01no506_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:14 2005
         (248 letters)



>mm_chr2_44703033_44703680
          Length = 648

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtttgccataaaataatcatgattttaaaaaaggtttggctgcctgacaaaaagcaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtttgccataaaataatcatgattttaaaaaaggtttggctgcctgacaaaaagcaaaa 260

                                                                       
Query: 61  catacctttaaaaaaatttagcacaaaaatgaaataatttaaaacatcaggttaccttta 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catacctttaaaaaaaattagcacaaaaatgaaataatttaaaacatcaggttaccttta 320

                                                                       
Query: 121 agatattggggaccctaaaaatggctggtacactgggtcgggttgacactcctgctaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatattggggaccctaaaaatggctggtacactgggtcgggttgacactcctgctaatg 380

                                                                       
Query: 181 tatctgtcaaacaccaattcatcagcagcttgcttttatgacaattaatcacatttatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatctgtcaaacaccaattcatcagcagcttgcttttatgacaattaatcacatttatga 440

                   
Query: 241 cactctcc 248
           ||||||||
Sbjct: 441 cactctcc 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no506_c09.g1 MSMg01no506_c09.g1 CHROMAT_FILE:
MSMg01no506_c09.g1 PHD_FILE: MSMg01no506_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:14 2005
         (244 letters)



>mm_chr2_44844289_44844932
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggaaagagacttcatgccaagccactaatcaccctgtcgtcttgttctttctcccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttggaaagagacttcatgccaagccactaatcaccctgtcgtcttgttctttctcccagg 385

                                                                       
Query: 61  aaagagaccacaccagtgtcagatttgtaagaaagcgttcaaacacaaacaccaccttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagagaccacaccagtgtcagatttgtaagaaagcgttcaaacacaaacaccaccttat 325

                                                                       
Query: 121 cgagcactcgaggctgcactcgggcgagaagccctatcagtgtgacaaatgtggcaagcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgagcactcgaggctgcactcgggcgagaagccctatcagtgtgacaaatgtggcaagcg 265

                                                                       
Query: 181 cttctcacactcgggctcctactcgcagcacatgaatcacaggtactcctactgcaagcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttctcacactcgggctcctactcgcagcacatgaatcacaggtactcctactgcaagcg 205

               
Query: 241 ggag 244
           ||||
Sbjct: 204 ggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)