Query= MSMg01no506_f02.b1 MSMg01no506_f02.b1 CHROMAT_FILE:
MSMg01no506_f02.b1 PHD_FILE: MSMg01no506_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:28 2005
(679 letters)
>mm_chr2_128820030_128821108
Length = 1079
Score = 982 bits (508), Expect = 0.0
Identities = 536/546 (98%), Gaps = 3/546 (0%)
Strand = Plus / Minus
Query: 132 aaaa-gcaaggtgatagtgactgagaaatgacagtcaaagttgtcttctggctttcgtgg 190
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 aaaaggcaaggtgatagtgactgagaaatgacagtcaaagttgtcttctggctttcgtgg 1020
Query: 191 gtatacacaaaggtacaaatgcatccgccacacatatacctttgtgcacacatagacaag 250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 gtatacacaaaggtacaaatgcatccgccacacatatacctttgtgcacacatagacaaa 960
Query: 251 gaatggggaagagagagagagatggcttagcagttaataccgctcgcttctcttccagag 310
||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 959 gaatgggga--agagagagagatggcttagtagttaataccgcttgcttctcttccagag 902
Query: 311 gacaagtgttcagtctccagcacccagatggaatcttataacaatctgtaactccagccc 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gacaagtgttcagtctccagcacccagatggaatcttataacaatctgtaactccagccc 842
Query: 371 caggggatccaatgtctcttctagcccctgggggcactgcatgtacatggtgtaaaaatg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 caggggatccaatgtctcttctagcccctgggggcactgcatgtacatggtgtaaaaatg 782
Query: 431 tacacacaaaataacaaaatcaaaatttttaaaaagacagcaaaaagatgaaacatataa 490
||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||
Sbjct: 781 tacacacaaaataacaaaatcaaaaatttaaaaaagacaacaaaaagatgaaacatataa 722
Query: 491 ttttatctctaaactcagaagaaattggtactattaaattaagaaaaagaataaagttct 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttttatctctaaactcagaagaaattggtactattaaattaagaaaaagaataaagttct 662
Query: 551 tgtagataagaatagtgcttttctaatattaaattaatatttatataagaactttggtca 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgtagataagaatagtgcttttctaatattaaattaatatttatataagaactttggtca 602
Query: 611 tacaatgcacatacttaagaaacaagcaaagtgttgtcttacggctgttttcttttctag 670
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tataatgcacatacttaagaaacaagcaaagtgttgtcttacggctgttttcttttctag 542
Query: 671 agctgg 676
||||||
Sbjct: 541 agctgg 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_f02.g1 MSMg01no506_f02.g1 CHROMAT_FILE:
MSMg01no506_f02.g1 PHD_FILE: MSMg01no506_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:28 2005
(448 letters)
>mm_chr2_128691864_128692711
Length = 848
Score = 774 bits (400), Expect = 0.0
Identities = 434/448 (96%), Gaps = 6/448 (1%)
Strand = Plus / Plus
Query: 1 tcagtggacacagtatggaactcacaaaaacctcaagtaacgtggtgtacctggagtcta 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tcagtggacacagtatggaactcacaaggacctcaagtaacgtggtgtacctggagtcta 260
Query: 61 ccagacagtatagaccccaaggttctcagatccatctgagacgagacctgctggcaagca 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ccagacagtatagaccccaaggttctcagatccatctgagatgagacctgctggcaagca 320
Query: 121 gtaaggatggaaattaccctccagatcatctcttttatttaggagatgggctaggatggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaggatggaaattaccctccagatcatctcttttatttaggagatgggctaggatggg 380
Query: 181 caagggacttcattggcagaggccagtggacctccaagtggagccagtgtgagctgccct 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 caagggacttcattggcagaggccagtgggcctccaagtggagccagtgtgagctgcccc 440
Query: 241 ggagaagccctgtctggggttcctctctgtctctaaatgttcccactttgctgacttttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagaagccctgtctggggttcctctctgtctctaaatgttcccactttgctgacttttg 500
Query: 301 tggcacctaagagtgacattataggtgtgtatctgtgtgagtgtgtgagtct--gcatgc 358
|||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct: 501 tggcacctaagagtgacattataggtgtgtgtctgtgtg----tgtgagtctatgcatgc 556
Query: 359 atgtgtctgtggattcacaattgccttgtgtgtgatgaaggtgagtgtgcatatatgcgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atgtgtctgtggattcacaattgccttgtgtgtgatgaaggtgagtgtgcatatatgcgt 616
Query: 419 gtgtcagggtatgtgagggaatgtgtgt 446
||||| |||||||||||||||||||||
Sbjct: 617 atgtcatggtatgtgagggaatgtgtgt 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
