Query= MSMg01no506_j03.b1 MSMg01no506_j03.b1 CHROMAT_FILE:
MSMg01no506_j03.b1 PHD_FILE: MSMg01no506_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:49 2005
(578 letters)
>mm_chr2_20174138_20175115
Length = 978
Score = 741 bits (383), Expect = 0.0
Identities = 392/395 (99%)
Strand = Plus / Minus
Query: 4 ggaattccactcttttttacaccatttgtcagaaacacttcagtgtcagaaaggacactt 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggaattccactctaatttacaccatttgtcagaaacacttcagtgtcagaaaggacactt 336
Query: 64 atttcctttgtttctagttttgctaaaacaattatatctctgattataagagttaaaaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atttcctttgtttctagttttgctaaaacaattatatctctgattataagagttaaaaat 276
Query: 124 aattagccatgaatccagtagtctgagggaggtttgttgtgcttgagggaggttaggcca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aattagccatgaatccagtagtctgagggaggtttgttgtgcttgagggaggttaggcca 216
Query: 184 aaggtgttagggcagaaattctcaacctgtggatctggacccaaaacaaccctttcacag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 aaggtgttagggcagaaattctcaacctgtggatctggacccaaaacaaccctttcacag 156
Query: 244 ggttgcctcagaccatcagaaaacacagacatttgcattatgactcataatgttagcaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ggttgcctcagaccatcagaaaacacagacatttgcattatgactcataatgttagcaag 96
Query: 304 actacagttataaagcaccaacaaaaataattttatggttgggggtcaccacaacaatga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 actacagttataaagcaccaacaaaaataattttatggttgggggtcaccacaacaatga 36
Query: 364 ggaatggtactaaagtgttgaaacattatgaaagt 398
|||||||||||||||||||||||||||| ||||||
Sbjct: 35 ggaatggtactaaagtgttgaaacattaggaaagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_j03.g1 MSMg01no506_j03.g1 CHROMAT_FILE:
MSMg01no506_j03.g1 PHD_FILE: MSMg01no506_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:49 2005
(576 letters)
>mm_chr2_20001974_20002949
Length = 976
Score = 864 bits (447), Expect = 0.0
Identities = 538/581 (92%), Gaps = 26/581 (4%)
Strand = Plus / Plus
Query: 4 aaaataaaatccagaaaacaaataagcaaaaacccaaatgtgtaattttcaggaaatagc 63
||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 204 aaaataacctccagaaaacaaacaagcaaaaacccaaatgtgtaaatttcaggaaatagc 263
Query: 64 cagctggaaaggacatgataaaatggaagctatgcaatagctagaagagaaggaactaga 123
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cggctagaaaggacatgataaaatggaagctatgcaatagctagaagagaaggaactaga 323
Query: 124 gagaaaaaaggcagacaaacaggaagagagaatatctataggatagaaagatttataata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagaaaaaaggcagacaaacaggaagagagaatatctataggatagaaagatttataata 383
Query: 184 gaaatatatatctataagtatatatataatgtgtaaaaatata--gtttatttttattta 241
|||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 384 gaaaaatatatctataagtatatata--atgtgtaaaaatatatagtttatttttattta 441
Query: 242 tatctatgtaatatattacatacacacatacacac-----acacatatatatatgtgtgt 296
||||||||||||||||| |||||||| ||| | | ||||||||||
Sbjct: 442 tatctatgtaatatattgcatacacatata-----tgtgtatatatatatatat------ 490
Query: 297 gtatatatatatgaaaaaa-aggcgcatgaataaagaaatagttgcataaataaagattt 355
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 --atatatatatgacaaaacaggcgcatgaataaagaaatagttgcataaataaagattt 548
Query: 356 attgaaaggcctctgaacatctagggtctgtatcatctcttacagtgatgtatttcctaa 415
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 549 attgaaaggcctctgaacatctagtgtctgtattatctcttacagtgatgtatttcctaa 608
Query: 416 tttgtctaaaataggtcctagcatgttctgattgcactgatataattatcagtatcttga 475
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 609 tttgtctaaaataggtcctagcatgttctgattgcactgatatatttatcagtatcttga 668
Query: 476 tttgtacaacatgacaaatctcctctttctagggttctcttcagaaggcggattaactgt 535
|||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 669 tttgtaca---tgacaaatctcctctttctagggttctctttagaaggtggattaactgt 725
Query: 536 ctgctttttgcacatttaagttgtagacaagaacatctgag 576
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ctgctttttgcacatttaagttgtagacaagaacatctgag 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
