Query= MSMg01no506_j15.b1 MSMg01no506_j15.b1 CHROMAT_FILE:
MSMg01no506_j15.b1 PHD_FILE: MSMg01no506_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:52 2005
(674 letters)
>mm_chr2_55139505_55140578
Length = 1074
Score = 1114 bits (576), Expect = 0.0
Identities = 579/580 (99%)
Strand = Plus / Minus
Query: 95 gctcagtctgctgtcctatagagcccaggaccacgagaccacagaaagcgccacccataa 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 gctcagtctgctgtcctatagagcccaggaccacgagaccacagaaagcgccacccataa 1015
Query: 155 tgggctgggacctctgccattaatcattaataagaaactgccttatagctggaatttatg 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 tgggctgggacctctgccattaatcattaataagaaactgccttatagctggaatttatg 955
Query: 215 gaagcactttttaagttgaggttccttcctttcagttagctctagtttttgttaactaga 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 gaagcactttttaagttgaggttccttcctttcagttagctctagtttttgttaactaga 895
Query: 275 gtggacataaagctaaccagaaaacatgccaagtggttacttggatattatattgtttat 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 gtggacataaagctaaccagaaaacatgccaagtggttacttggatattatattgtttat 835
Query: 335 aatacaaggtcaaatgtgtggctgtataagcagttctgagaacagtaagaatcaagcaat 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 aatacaaggtcaaatgtgtggctgtataagcagttctgagaacagtaagaatcaagcaat 775
Query: 395 ctagcatggatatagcaactcatgaaggacatgcttggtataactcactgtaagacaggg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ctagcatggatatagcaactcatgaaggacatgcttggtataactcactgtaagacaggg 715
Query: 455 tgatacagtcctcctaagttaaaaattaaatataattctaatattcctgagggagataaa 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tgatacagtcctcctaagttaaaaattaaatataattctaatattcctgagggagataaa 655
Query: 515 aggaggcaagaaaagaagaaatacagttgccaaaattttgttttagcccttataaaataa 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aggaggcaagaaaagaagaaatacagttgccaaaattttgttttagcccttataaaataa 595
Query: 575 aatagacttatgtagtaccccattagatgaaagaactttgtgacagctgcacaaaaaata 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aatagacttatgtagtaccccattagatgaaagaactttgtgacagctgcacaaaaaata 535
Query: 635 atggggaaaaggagcgtaaagcttagaaaatcagcaaaac 674
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 534 atggggaaaaggagcctaaagcttagaaaatcagcaaaac 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_j15.g1 MSMg01no506_j15.g1 CHROMAT_FILE:
MSMg01no506_j15.g1 PHD_FILE: MSMg01no506_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:52 2005
(693 letters)
>mm_chr2_54963059_54964150
Length = 1092
Score = 1224 bits (633), Expect = 0.0
Identities = 678/693 (97%), Gaps = 3/693 (0%)
Strand = Plus / Plus
Query: 1 acattcaggactacttaaagctgaaatgtctggctttgtaatttgcttcattacatagag 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattcagtactacttaaagctgaaatgtctggctttgtaatttgcttcattacatagag 260
Query: 61 atttttggtttgtaacctttgaagcaatagcttttgactgctgctcatacattttttttt 120
||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct: 261 atttttggtttgtaacctttgaagcaatagcttttgactgctgctaataca-tatttttc 319
Query: 121 caagaggggtatttgcatactgatttgacagaacaatactaaatacaaaggtcacaactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caagaggggtatttgcatactgatttgacagaacaatactaaatacaaaggtcacaactg 379
Query: 181 acattacctgtgtcattcaaaaaaattattcagtatatttttttaaaaaaatctttattt 240
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 380 acattacctgtgtcatt-aaaaaaattattcagtatattttttt-taaaaatctttattt 437
Query: 241 caatgtgacataaggtaattgatcaaatctttcagctactataataggtggtcagactat 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 438 caatgtgacataaggtaattgatcaaatctttcaactactataataggtggtcagactat 497
Query: 301 aataaattgatatcagtatgttgtaatataagtcaatgtatggtaagctaccccaaaaga 360
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 498 aataaattgatatcagtacgttgtaatataagtcaatgtatgataagctaccccaaaaga 557
Query: 361 gcaaagtttgttgtttaaagaaggatctattagaagcatgaaatggtaagtgcttctttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 558 gcaaagtttgttgtttaaagaaggatctattagaagcatgaaatggtaagtgcttctctg 617
Query: 421 caagacaaggtatgcataagctaactcagatttgagacagagacatgattttctttgttg 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 618 caagacaaggtatgcataagctaactcagatttgagagagagacatgattttctttgttg 677
Query: 481 ctgttgctctaacctatactgttcttaaaaagtaaagtagttgttttatttagttttata 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctgttgctctaacctataccgttcttaaaaagtaaagtagttgttttatttagttttata 737
Query: 541 tctgattttcacgctggctaatagttggatttcctgtcatcctaagaataaatcaaccac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tctgattttcacgctggctaatagttggatttcctgtcatcctaagaataaatcaaccac 797
Query: 601 cttcgtactttcttgctatcttatgcaatttcttttttacttcacttttttctactaaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cttcgtactttcttgctatcttatgcaatttcttttttacttcacttttttctactaaaa 857
Query: 661 atgacttgaaactctgtattaaaaaatgataac 693
||| |||||||||||||||||||||||||||||
Sbjct: 858 atggcttgaaactctgtattaaaaaatgataac 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1092
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1082
Effective search space: 739006
Effective search space used: 739006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
