BAC Information

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BAC

Clone NameMSMg01-506M03
Chromosome2 (Build37)
Map Location 125,899,928 - 125,900,303
singlet/doubletsinglet
Overlap geneFgf7
Upstream geneSlc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2
Downstream geneDtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506M03.T7 (MSMg01no506_m03.b1)MSMg01-506M03.TJ (MSMg01no506_m03.g1)
ACCAG581073AG581074
length742856
length of high quality
(start - end)
376 (70 - 445)49 (79 - 127)
definitionCHROMAT_FILE: MSMg01no506_m03.b1 PHD_FILE: MSMg01no506_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:04 2005CHROMAT_FILE: MSMg01no506_m03.g1 PHD_FILE: MSMg01no506_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTAACTTATAATGCGGCGCTAAAGACTCCTAATCCCGAGGAGCGCGGAA
TTCCTGGNTTGCTAAACAACGGCCTCCTTATTCTCTCCCTACCATCAGTT
TCCACTTTGAGTCTGCTACTAAAGCTCCTGGTATCATTAAGACAACAGCA
CCTTGACCCCCTGCACTCACTGTAACGGGACAGCTTAGCTATGCTTTGGC
AGTGATAATGTTTTCTTTCTGGGATGCCAGTTTTTGCTACAGATGATGTC
TTATCTACTTTGCTTTTGGATAAAAAGTAGAAATCAGGTTATTTAGGTAA
TTTATGAATTATTTTTTTTGCCTGATAACCTGTAAGCTGTTGCTTTTACC
TTGACTATGGAAGAAAATTAGTCTGTACTCTAAAGGGAATAAAATAATTT
CATCATGAAAAGTTAATTTTCTTGCTTTAAGGCTATAGAGTGTAACAGCG
ACAACGATGGTGCACATATATAATTTACTATACTTGAATACACAATTCTG
ATGATTGAACTAACGTAATTCCCCCCACCCTTGTCAGATAAATGGGATTA
ACTTTTGCTTTGAACATTCCTAGAAGAATTATTATTTTCCTATATTGACA
GCACTCCCTGAATATTTATTCCTAGCCAAATTGAGTTCTTTCCCTCTCAC
TTATTTTGAGCAGAGTTTTGGCTCATCCCTTTCCCCTGTATTATAATCCC
CCTTATTTTCGAGTCGTGCTTGTCCCTTTGTCCTTTTCCTTG
CCCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTTGAACCATCACAAAAA
AANTAACTTATGGTATACAGTTCAAAAANGAANTGNTCCANNCANGAACT
TCANTCCCACCNACANCATGNNNNGCTGTTANNCTNNNTAGACGTTNNNN
NGGCTTCTCATTANNAAATATAGTTGNNNNNNNNNNNNNNNNNNNCTNNN
NCCCCCCTTGTTCGGGGGGTCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGAGGGGGGCTGCGTGGGGGGGGGGNNCATTTTTANNTTTNCC
ACTCCCTCCCCTCNCAAATAANCAAAANCCCCNCCCCCCAAANCCCCCCC
CCCTTCCCCANNCTTCTCCCCCAANCCCCCCCCCCCCAAAAACCCCACCN
NCNNTAAATTACCNCTTTCCCAAACCCNCNNNTTTAAAAATCTCCCNCCC
CCCCCCCCAAAAAAAACTCCCCCCCNCCCCCCCCCCCCCCCNNNNNNNCA
CCCCCCCCCCAAAAAACCCCCCCCCCCCCCNCCCCCNNNACCCCCCCCCN
CCNTCTTCCCCCCCCCTNCCCCTTTTTCCCTCTCACCCCCCCCCNACAAC
CCCCCCCCCTCCCCCCCCNNNNNCCCCCCCCCCCCCCCCCCCNNCCCCTT
CCCCCCNNNCCCTNTTTNNNCNTNCCNNCNNTTTCCCCCCTCCCCTTTCT
NNNCCNCTCCTTTNNCCCCCCCCCCCNCCCCCCCCCCCCCCCTTTCNNCN
NNNNCNCCCCCAATCCCCCCCCCCCTTCCTCTTTATTATTTTTTGTGTGG
TGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_m03.b1 MSMg01no506_m03.b1 CHROMAT_FILE:
MSMg01no506_m03.b1 PHD_FILE: MSMg01no506_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:04 2005
         (376 letters)



>mm_chr2_125899728_125900503
          Length = 776

 Score =  688 bits (356), Expect = 0.0
 Identities = 371/376 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cggcctccttattctctccctaccatcagtttccactttgagtctgctactaaagctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cggcctccttattctctccctaccatcagtttccactttgagtctgctactaaagctcct 517

                                                                       
Query: 61  ggtatcattaagacaacagcaccttgaccccctgcactcactgtaacgggacagcttagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggtatcattaagacaacagcaccttgaccccctgcactcactgtaacgggacagcttagc 457

                                                                       
Query: 121 tatgctttggcagtgataatgttttctttctgggatgccagtttttgctacagatgatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 456 tatgctttggcagtgataatgttttctttctgggatgccagtttttgctacagatgaggt 397

                                                                       
Query: 181 cttatctactttgcttttggataaaaagtagaaatcaggttatttaggtaatttatgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cttatctactttgcttttggataaaaagtagaaatcaggttatttaggtaatttatgaat 337

                                                                       
Query: 241 tattttttttgcctgataacctgtaagctgttgcttttaccttgactatggaagaaaatt 300
           ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tatttgtggtgcctgataacctgtaagctgttgcttttaccttgactatggaagaaaatt 277

                                                                       
Query: 301 agtctgtactctaaagggaataaaataatttcatcatgaaaagttaattttcttgcttta 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 actctgtactctaaagggaataaaataatttcatcatgaaaagttaattttcttgcttta 217

                           
Query: 361 aggctatagagtgtaa 376
           ||||||||||||||||
Sbjct: 216 aggctatagagtgtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)