Query= MSMg01no507_c02.b1 MSMg01no507_c02.b1 CHROMAT_FILE:
MSMg01no507_c02.b1 PHD_FILE: MSMg01no507_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:33 2005
(718 letters)
>mm_chr2_21727723_21728839
Length = 1117
Score = 1342 bits (694), Expect = 0.0
Identities = 709/714 (99%), Gaps = 1/714 (0%)
Strand = Plus / Plus
Query: 5 ggaattccaattaagctgtatgactacctttaaaatcttcattatgatgatatataaaag 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattccaattaagctg-atgactacctttaaaatcttcattatgatgatatataaaag 263
Query: 65 tgcttcagtgattggcagcaaatgctactttatcaggcaagctccatgagcatccttcaa 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcttcagtgattggcagcaagtgctactttatcaggcaagctccatgagcatccttcaa 323
Query: 125 ctatagcagagtgtctttctgtgtgctgcagttgtttagaagaattatgcatttcacact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctatagcagagtgtctttctgtgtgctgcagttgtttagaagaattatgcatttcacact 383
Query: 185 cttttgtttcaaatacaatgatagacatattacatgtgctgatactggtcactattgtta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttttgtttcaaatacaatgatagacatattacatgtgctgatactggtcactattgtta 443
Query: 245 ataattatgcaaatgaggtttccaggtcattttcaggcctcttgaagaaaaagtgaggca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataattatgcaaatgaggtttccaggtcattttcaggcctcttgaagaaaaagtgaggca 503
Query: 305 aaataaattctacatagattgatggagcaaagaagatttatggatcagggagcaacagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 504 aaataaattctacatagattgatggagcaaagaagatttatggatcaggaagcaacagaa 563
Query: 365 aaaaacgagattataggctttgctagaagaaacagtacagaagttttatagaccaagaag 424
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaaatgaggttataggctttgctagaagaaacagtacagaagttttatagaccaagaag 623
Query: 425 aggaggaaggacctacccacagaattgctacaaagagtctgtagctgttgaaagaggaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggaggaaggacctacccacagaattgctacaaagagtctgtagctgttgaaagaggaaa 683
Query: 485 gatcaatttctctcaatgatgagcctcatgattggttgcccaatcctgagaggtcagccc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gatcaatttctctcaatgatgagcctcatgattggttgcccaatcctgagaggtcagccc 743
Query: 545 taaacacatatctgtgcaggcagcgctaattgggcatgcattcacatatatgcaaaacaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taaacacatatctgtgcaggcagcgctaattgggcatgcattcacatatatgcaaaacaa 803
Query: 605 aaattttgagggggaggacactgggtgagttagagaaggtgtaagagggagaagttgtga 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaattttgagggggaggacactgggtgagttagagaaggtgtaagagggagaagttgtga 863
Query: 665 aaatatagtgtagtcttacaggaaactccccaaatactaaatttagtttttcca 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 aaatatagtgtagtcttacaggaaactccccaaatactaaatttagtttttcca 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1117
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1107
Effective search space: 783756
Effective search space used: 783756
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no507_c02.g1 MSMg01no507_c02.g1 CHROMAT_FILE:
MSMg01no507_c02.g1 PHD_FILE: MSMg01no507_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:33 2005
(646 letters)
>mm_chr2_21895970_21897015
Length = 1046
Score = 1065 bits (551), Expect = 0.0
Identities = 569/575 (98%)
Strand = Plus / Minus
Query: 1 ttctatgccttgagtaggtacttactgcatgcttggtgatccgatgaaagtagcaactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttctatgccttgagtaggtacttactgcatgcttggtgatccgatgaaagtagcaactgg 516
Query: 61 cagtgagacagagctctcatctctgccagccagctgctgtctgtctttcacggactgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cagtgagacagagctctcatctctgccagccagctgctgtctgtctttcacggactgctt 456
Query: 121 atcaggatctgtcctgtgatagacatagtcctacaatatctggtgccaagatttgatttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atcaggatctgtcctgtgatagacatagtcctacaatatctggtgccaagatttgatttg 396
Query: 181 aaaccaaatggaaaagacccaaacagttggtgaatatctaggtgtttctgagttacgttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaaccaaatggaaaagacccaaacagttggtgaatatctaggtgtttctgagttacgttg 336
Query: 241 ctatcaccttcattatcatccaaggcaaggaaatatgagctggtacagttcttcttaaag 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ctatcaccttcattatcatctgaggcaaggaaatatgagctggtacagttcttcttaaag 276
Query: 301 aggtcagatgctggaacagaaaggaagaaggggccatataaaatgatgcaatagaagtaa 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 275 aggtcagatgctggaacagaaaggaagaaggggccatataaattgatgcaatagaagtaa 216
Query: 361 tttaaatccacttaattttcttttggcagtgatggggattgaacctagaaattgtaaatg 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 215 tttaaatccacttaattttcttatggcagtgatggggattgaacctagaaattgtaaatg 156
Query: 421 ctaggcaactgctctaccaactaaccatatctctagcccttcttattttttgttaagttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ctaggcaactgctctaccaactaaccatatctctagcccttcttattttttgttaagttt 96
Query: 481 tgagatagccttgaacttccaaacttttgatccctgaccctcctatggcagtgtctctag 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 tgagatagccttgaaattccaaacttttgatccctgaccctcctatggcagtgtctctag 36
Query: 541 tagttaggattgcagaactgcaccactagaatatg 575
|||||||||||||||||||||||||||||| ||||
Sbjct: 35 tagttaggattgcagaactgcaccactagagtatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
