BAC Information

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BAC

Clone NameMSMg01-507D06
Chromosome2 (Build37)
Map Location 110,780,419 - 110,781,037
singlet/doubletsinglet
Overlap genenone
Upstream geneLgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507D06.T7 (MSMg01no507_d06.b1)MSMg01-507D06.TJ (MSMg01no507_d06.g1)
ACCAG581411AG581412
length1,321777
length of high quality
(start - end)
---618 (76 - 693)
definitionCHROMAT_FILE: MSMg01no507_d06.b1 PHD_FILE: MSMg01no507_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:39 2005CHROMAT_FILE: MSMg01no507_d06.g1 PHD_FILE: MSMg01no507_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTATCTTTTTCCGTTTTTTNTTCTNCTCCGCCATATTTGTTTTTTCT
CCAATTAACGCGGGGAAACGGTGCAGGGAAGGTTTTCCTACGGTAAACCG
ACCTTATGTGGTTTCGATGGCGTCCTGAGGCTGCGCGTTGTGCGCGCTCC
CGCGCCGTCTTGTGCCTACGAGCGTTACGGACCCCACCCGTGTGTAGCAT
CGGTGCATTATATGATGTACTTTATTCATCCGAGTGGTCACAGCTAAGCC
ACAGAAGCAACTAACGCCCACGTCCTGCTTAACCCGCACCCCCCGCAGGC
ACCCGGAGGTTTAGGCTCTCTCTTTCTGTGCTGATCTTTATGACGTGTGA
CGAGGCGCAGCGTTGTCGTACCGCACATGGATGGTTGCTTCCTTCGTGCC
ACAATATCTAGAATGACTAGTGACTTATCGATCCACGAGACGCCGCTTTA
GTCTCCCACCGCTACCTTTTGGCGCCGCACACCGTAGCNGTGTGGCGTGC
GCTCTCATTCCTCTAGTCCTTCTTCTCCTATTACGTCAATCTTCCATTCC
CTACTATGACGTAGTAGCTGCAATGCTGACTACTATTCCATACCGCTGAC
CTCGACTGATATGCGACGCGGCGCCGCACCGTATGGTCGAGCGGGCTGCA
ACGGCGAGCACGTGTCACACCGTTACTAGTGGAGTAGCTATGGGTGATGA
CAAGATCTGGCATACGATACTGCGCGGTGTGTAGAATTCCTGACTGGAGA
GCTCCATCACGCGCGTCGCGAGCTGACGTGTGGCGACTCACAACAATTCA
GCGCTCCAACCGTAATGTGCGTTCACACGGAGGTGATGATCGCCGGACCG
GAGTGGCCAGTGATATCATGAATTTCACTATGCCTCATTCCACACTATGC
GTGCGCTTGTGACCTATGTCGGAGTGGTCCTGAGTCGCGCGGACGCGACG
AGACGCCTCATGTGGCGTGCGAACTGGCTGTGATCGTGATGCTATATACT
TAGTTCTCACACGTCAAGTTGCTCTACTGCCCCAAAGTCGAGCTAAGTGA
CGCACGAGCGCTCCCGACGGGCGCTATGGGAGGAACACAGAGATGAAATT
CGCCGTATAACACACAGAGATCCATAGACCGTTACACGGGGTTCGCCGCT
GCAGCTTTTTTAGATCCGTCCACTGTTCGCACACGCACGTGTGGTCTCAC
GCGCGCTAGTGACCGTGCTCTGCACATGAGAGATCCGTGCGGCACGTGAT
ATCACCAAGGCTCACCACGGTCGACCCTCTGCTGTTCTTGTTCACGTGTC
GAATCGAGAGCACAGCGTGAG
ACAATGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGATGATTCTTGAATCTTGAAATT
TAAGACGTTTAGATCACATAGAGCTAGATAAATGAACAAATATAGATGAA
ATAAATTGCTCATGATACCAAGAAGGAGTGAACACTTTTAATGTATATCT
GTGAATATATTAACACCTAACCACACTACCTCCACTCAGAAAAAAATGTA
TGCTAGTAGTGTTTGCTTCAAAGCCAACCATAGAATAAACATACTTCTAT
GAGTTCTATATAAGTTTTAGTAAACCTAGTAACTTTTTAGAAACTGATCA
ATATACACAATCAACACATGACATTTGTAAAATATTTTCAGACATATATT
TCCCATATCCACCCACTTTTGCCCAAAATGAAGAGTTCCAATTCTTGGGC
AGATTGCATCTTGCCTGTGGTGATGATAGATCGTATCCTGCTGCATCTTG
CAGTAAGTCCAGACTTGCTACATATCTAACCTTTGCATCAATGTTAAAAT
TTAAAGTAGTTCCTATTTGAAGTGTTCTTTAGGAGGAAAGACAATAGCTG
AAGAGACTGCAAGGTTGATTGTACTAATGCACTGCCAAGTTTAGAATATA
ATTTCACACTTCTGTAGTTCCTGATGAAGTATAGCAAGAACAGGGAATTT
AGCTCTTAATGTACCACATGCTTTTGTTTTAGATACAAAGTGACTCATCC
CAGAAAGGACAGTGCTCCTGTAAGGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_d06.g1 MSMg01no507_d06.g1 CHROMAT_FILE:
MSMg01no507_d06.g1 PHD_FILE: MSMg01no507_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:40 2005
         (618 letters)



>mm_chr2_110780219_110781237
          Length = 1019

 Score = 1166 bits (603), Expect = 0.0
 Identities = 615/619 (99%), Gaps = 1/619 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatgattcttgaatcttgaaatttaagacgtttagatcacatagagctagataaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagatgattcttgaatcttgaaatttaagacgtttagatcacatagagctagataaatga 260

                                                                       
Query: 61  acaaatatagatgaaataaattgctcatgataccaagaaggagtgaacacttttaatgta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 acaaatatagatgaaataaattgctcatgataccaagaaggagtgaacacttttaacgta 320

                                                                       
Query: 121 tatctgtgaatatattaacacctaaccacactacctccactcagaaaaaaa-tgtatgct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tatctgtgaatatattaacacctaaccacactacctccactcagaaaaaaaatgtatgct 380

                                                                       
Query: 180 agtagtgtttgcttcaaagccaaccatagaataaacatacttctatgagttctatataag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtagtgtttgcttcaaagccaaccatagaataaacatacttctatgagttctatataag 440

                                                                       
Query: 240 ttttagtaaacctagtaactttttagaaactgatcaatatacacaatcaacacatgacat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttagtaaacctagtaactttttagaaactgatcaatatacacaatcaacacatgacat 500

                                                                       
Query: 300 ttgtaaaatattttcagacatatatttcccatatccacccacttttgcccaaaatgaaga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtaaaatattttcagacatatatttcccatatccacccacttttgcccaaaatgaaga 560

                                                                       
Query: 360 gttccaattcttgggcagattgcatcttgcctgtggtgatgatagatcgtatcctgctgc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttccaattcttgggcagattgcatcttgcctgtggtgatgatagatcgtatcctgctgc 620

                                                                       
Query: 420 atcttgcagtaagtccagacttgctacatatctaacctttgcatcaatgttaaaatttaa 479
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 atcttgcagtaagtccagacttgcttcatatctaacctttgcatcaatgttaaaatttaa 680

                                                                       
Query: 480 agtagttcctatttgaagtgttctttaggaggaaagacaatagctgaagagactgcaagg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtagttcctatttgaagtgttctttaggaggaaagacaatagctgaagagactgcaagg 740

                                                                       
Query: 540 ttgattgtactaatgcactgccaagtttagaatataatttcacacttctgtagttcctga 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgattgtactaatgcactgccaagtttagaatataatttcacacttctgtagttcctga 800

                              
Query: 600 tgaagtatagcaagaacag 618
           ||||||| |||||||||||
Sbjct: 801 tgaagtacagcaagaacag 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space:   613472
Effective search space used:   613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)