Query= MSMg01no507_h17.b1 MSMg01no507_h17.b1 CHROMAT_FILE:
MSMg01no507_h17.b1 PHD_FILE: MSMg01no507_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:03 2005
(487 letters)
>mm_chr2_26471329_26472211
Length = 883
Score = 808 bits (418), Expect = 0.0
Identities = 463/480 (96%), Gaps = 4/480 (0%)
Strand = Plus / Plus
Query: 8 gaattccatcccatttcttaatgggagcatccatgtcatttttataaccataggttaaaa 67
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattccatcccatttcaaaatgggagcatccatgtcatttttataaccataggttaaaa 267
Query: 68 gaaggttaggtgggttacagcaaagaagaggagtctcttataggtctcagacattcttgg 127
||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 268 gaagggtaggtgggttacagcaaaaaagaggagtctcttataggtctcggacattcttgg 327
Query: 128 cttttgtgtctgaacacattcttagctttggggttggtggaacctagtggtctattaagt 187
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cttttgtgtctgatcacattcttagctttggggttggtggaacctagtggtctattaagt 387
Query: 188 taacacgtttcaagacgtttggtgtggtagtcacagggatgttaagtcagagacaggaga 247
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 taacacatttcaaaacgtttggtgtggtagtcacagggatgttaagtcagagacaggaga 447
Query: 248 gcaacaagtgactattataaggggggctgaagatagcacaaggtaattttgcttttcaat 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gcaacaagtgactattataaggggggctgaagatagcacaaggtaattttgcttttcaat 507
Query: 308 cttcaacattccaactctcacaatcgtgaaattcaacacagttgtgactcctcctcctcc 367
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cttcaacattccaactttcacaatcgtgaaattcaacacagttgtgactcctcctcctcc 567
Query: 368 tcttgtatgagtacacctgtgtgggtgcacatgcatggaggccaaagaaagacgttaaca 427
||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||
Sbjct: 568 tcttgtatgagtacacctgtgtgtgtgcacatg----gaggccaaagaaagatgttaaca 623
Query: 428 catacaaattatatagcataatggattctatatgacaattctgtgctggtttttgtcaac 487
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 624 catacaaattatatagcataatggattcaatatgacaattctgtgctggcttttgtcaac 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 883
Length adjustment: 10
Effective length of query: 477
Effective length of database: 873
Effective search space: 416421
Effective search space used: 416421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_h17.g1 MSMg01no507_h17.g1 CHROMAT_FILE:
MSMg01no507_h17.g1 PHD_FILE: MSMg01no507_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:03 2005
(543 letters)
>mm_chr2_26670074_26671016
Length = 943
Score = 1027 bits (531), Expect = 0.0
Identities = 539/543 (99%), Gaps = 3/543 (0%)
Strand = Plus / Minus
Query: 1 cctgggtcttctggtaatttttccttcttgaacagcagcctgctcttagcccatgtgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cctgggtcttctggtaatttttccttcttgaacagcagcctgctcttagcccatgtgact 545
Query: 61 atgtacagaggactctggctattatcctggtctaggggttggatggaattcaggaggtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atgtacagaggactctggctattatcctggtctaggggttggatggaattcaggaggtcc 485
Query: 121 cgtggtacatagccttgttaggagaaaatctactctctacacaggtgtgcgccatgattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cgtggtacatagccttgttaggagaaaatctactctctacacaggtgtgcgccatgattc 425
Query: 181 tggaactctctcttcctacatatattgtactcacaattttcttatgaatattatttctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tggaactctctcttcctacatatattgtactcacaattttcttatgaatattatttctgt 365
Query: 241 gacatcaggagtttatcatccagtgctctcttgtgtgtaggctgtttctggagatgatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gacatcaggagtttatcatccagtgctctcttgtgtgtaggctgtttctggagatgatat 305
Query: 301 tcttttgtctgtatcctccactgtgcttgtcaggaagtaagaaattcctccttagcactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcttttgtctgtatcctccactgtgcttgtcaggaagtaagaaattcctccttagcactg 245
Query: 361 ccatcatccataagtggccacagtgactccattttctcatgaggtttttttttttttttt 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 244 ccatcatccataagtggccacagtgactccattttctcatgagg---ttttttttttttt 188
Query: 421 tttttcagaatattttagccacacccagacacccaggagaagtcataattcctgggttta 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ttttgcagaatattttagccacacccagacacccaggagaagtcataattcctgggttta 128
Query: 481 tctgctgtgtgatgtaggatctatgccttgccccagtcagcagcccaggtgtgatcagtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tctgctgtgtgatgtaggatctatgccttgccccagtcagcagcccaggtgtgatcagtg 68
Query: 541 gca 543
|||
Sbjct: 67 gca 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
