NNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGCACTGTTTCAATGGAGAGAAAACTGTGTATTTCTCTACT
TTTTCAGTAGTTTGTCCATTTAGGCTCTTTCTATTTTTTGTCTGTTACAA
ATAGTGCCGATCTGGACATATGTGTACATGTATTTATTTGAGCACCTATT
TCTAATTTTTAAAATGGATTCATAAAGGTACAATAGAAGATCAAATAATT
GTTCTGTGTTATACTGTTTGAGGAATGGACAAACTATTTCTATAACAGAT
GTATCATTTTAATTCTAACTAGCAATGTGTCAGATTTTCAAGTCCCTCAC
ACCTACACCTACATTTCACCATGCCTGATTTTCAAAATTGTTATTATAGT
CTACTCACTAATGTTGTGTTATTGTGGTTTTGCTTTGTACCCTCCTAATG
ATCAATTATAGTGAATATCTCACAATGTACTTGCTGGACACCTATGTGTC
TTTTTAGAATCATCTATGCAAATCTCTTATTATAGATTGACATAATTTTT
GTTGAATCATAATAGTGTACTACATAGCTAGCATTCTAGATTATTGATTA
ACCTGATTTGTGAAAACTTTCATGTATTCTATGGGCTTTTTCTATTTTCT
TGTAAGTTTTAGGAAGATTTATTTCTATTATGTATATGATGCATGTATTT
GAGACTATGTGCACCATGTGTATGCAGTGTCTTCAGGGTCAGAAGA

NNNNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGA
ACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGTCTTGAACTT
TCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTT
ACAAGGTACGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCTAT
CAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTT
TCTCTAGTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCAAGTGGT
TAAGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCAGAAG
TAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAATATGGTACACAAAAT
AAGTATACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTAAGGTC
AGGTAAGAATACCTGGGGAGAGATTGGAAGGAAGGAGAAGGAAAAAGAAA
AGAAAAAAGATCAATTAGCGGAGGTCTCTAGGAGAAGGAGCCTATACTCA
TCACTAGGTAAGCTCAAGGAGCCAGTTCTTAATAGTTCTGAATCAGATGA
AAAGGCTATTAGGGCCTGGAAGGCACTCTCCCGAGCAGGTGAAGCCACTG
GACAACTAACAAAGATCGTCCAGTGACTACAGGAGTCATTCTCAA

Query= MSMg01no507_i14.b1 MSMg01no507_i14.b1 CHROMAT_FILE:
MSMg01no507_i14.b1 PHD_FILE: MSMg01no507_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:07 2005
         (661 letters)



>mm_chr2_110116682_110117743
          Length = 1062

 Score = 1236 bits (639), Expect = 0.0
 Identities = 657/663 (99%), Gaps = 2/663 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagagaaaactgtgtatttctctactttttcagtagtttgtccatttaggctctttctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gagagaaaactgtgtatttctctactttttcagtagtttgtccatttaggctctttctat 259

                                                                       
Query: 61  tttttgtctgttacaaatagtgccgatctggacatatgtgtacatgtatttatttgagca 120
           ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 260 tttttgtctgttacaaatagtgctgatctggacatatgtgtacatatatttatttgagca 319

                                                                       
Query: 121 cctatttctaatttttaaaatggattcataaaggtacaatagaagatcaaataattgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cctatttctaatttttaaaatggattcataaaggtacaatagaagatcaaataattgttc 379

                                                                       
Query: 181 tgtgttatactgtttgaggaatggacaaactatttctataacagatgtatcattttaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtgttatactgtttgaggaatggacaaactatttctataacagatgtatcattttaatt 439

                                                                       
Query: 241 ctaactagcaatgtgtcagattttcaagtccctcacacctacacctacatttcaccatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 ctaactagcaatgtgtcagattttcaagtccctcacacctacacctacatttcacaatgc 499

                                                                       
Query: 301 ctgatttt-caaaattgttattatagtctactcactaatgttgtgttattgtggttttgc 359
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgatttttcaaaattgttattatagtctactcactaatgttgtgttattgtggttttgc 559

                                                                       
Query: 360 tttgtaccctcctaatgatcaattatagtgaatatctcacaatgtacttgctggacacct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttgtaccctcctaatgatcaattatagtgaatatctcacaatgtacttgctggacacct 619

                                                                       
Query: 420 atgtgtctttttagaatcatctatgcaaatctcttattatagattgacataatttttgtt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atgtgtctttttagaatcatctatgcaaatctcttattatagattgacataatttttgtt 679

                                                                       
Query: 480 gaatcataatagtgtactacatagctagcattctagattattgattaacctgatttgtga 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaatcataatagtgtactacatagctagcattctagattattgattaacctgatttgtga 739

                                                                       
Query: 540 aaactttcatgtattctatgggctttttctattttcttgtaagttttaggaagatttatt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaactttcatgtattctatgggctttttctattttcttgtaagttttaggaagatttatt 799

                                                                       
Query: 600 tctattatgtatatgatgcatg-tatttgagactatgtgcaccatgtgtatgcagtgtct 658
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 800 tctattatgtatatgatgcataatatttgagactatgtgcaccatgtgtatgcagtgtct 859

              
Query: 659 tca 661
           |||
Sbjct: 860 tca 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space:   684852
Effective search space used:   684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)