Query= MSMg01no507_j04.b1 MSMg01no507_j04.b1 CHROMAT_FILE:
MSMg01no507_j04.b1 PHD_FILE: MSMg01no507_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:10 2005
(681 letters)
>mm_chr2_91224336_91225416
Length = 1081
Score = 1232 bits (637), Expect = 0.0
Identities = 669/685 (97%), Gaps = 10/685 (1%)
Strand = Plus / Plus
Query: 7 gaattccaaaggaactctagagacaaattaaaacaggggtagaaagtggcccccagatga 66
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 197 gaattccaaaggaacactagagacaaattaaaacaggggtagaaagtggtccccagatga 256
Query: 67 gaatacgaagcaaagccccagggtccatgtgagtca--gtttaaactaagccagaaacag 124
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 257 gaatacgaagcaaagccccagggtccatgtgagtcactgtttaaactaagccagagacag 316
Query: 125 gaggaaaaaatgtattctgttgcctttgggttttcctgccaaagaaatagaagcc----- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaggaaaaaatgtattctgttgcctttgggttttcctgccaaagaaatagaagccgtaca 376
Query: 180 ---cagtgtaatctgaaaatggagagcccataggagtataggcaatcatccagtaatcat 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gcccagtgtaatctgaaaatggagagcccataggagtataggcaatcatccagtaatcat 436
Query: 237 caccaccgaggcagctttcagactccagaaaactctgacagaagaatgtcaagggaaaaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caccaccgaggcagctttcagactccagaaaactctgacagaagaatgtcaagggaaaaa 496
Query: 297 catgtccatttttgtagcaacacagacactaaactgaaggtggcaagcaaagaggggaca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 catgtccatttttgtagcaacacagacactaaactgaaggtggcaagcaaagaggggaca 556
Query: 357 tgagtaattccaaattccagttttcatttggtgaccacataaaaggagggcatgggtcac 416
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgattaattccaaattccagttttcatttggtgaccacataaaaggagggcatgggtcac 616
Query: 417 tgagctgaacaggtaaacatctcaagaaccatctaatgcatcccctctcaccgacgagtc 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 617 tgagctgaacaggtaaacatctcaagaaccatctaatgcatcccctctcaccgatgagtc 676
Query: 477 cactcagggaggctgtctacggcctttaacagagtatgttaccgttttggataaagtcag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cactcagggaggctgtctacggcctttaacagagtatgttaccgttttggataaagtcag 736
Query: 537 ccttcctaatattaacagtgctgcaaagaaacagcagattaaatactattctcatagaaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ccttcctaatattaacagtgctgcaaagaaacagcagattaaatactattctcatagaaa 796
Query: 597 actaccatataaattaacttttaatgcactacagggtcgctgggaacatatggcaatatg 656
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 actaccatagaaattaacttttaatgcactacagggtcgctgggaacatatggcaatatg 856
Query: 657 tggtgttagagacctttaaagttat 681
|||||||||||||||||||||||||
Sbjct: 857 tggtgttagagacctttaaagttat 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_j04.g1 MSMg01no507_j04.g1 CHROMAT_FILE:
MSMg01no507_j04.g1 PHD_FILE: MSMg01no507_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:10 2005
(642 letters)
>mm_chr2_91371406_91372448
Length = 1043
Score = 853 bits (441), Expect = 0.0
Identities = 458/465 (98%), Gaps = 4/465 (0%)
Strand = Plus / Minus
Query: 3 acacacac---aaaaaaaaacaatcaaatacgtgaaacagagagaaatgaggtaaaaggc 59
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 acacacacaaaaaaaaaaaacaatcaaatacgtgaaacagagagaaatgaggtaaaaggc 409
Query: 60 accaagatagctattctaattgggaccatagaaaacaatgaagttaatgttgtagtaagc 119
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 408 accaagatagctattctaattgggaccatagaaaacaatgaagtaaatgttgtagtaagc 349
Query: 120 ctgttaacataggtttgaaataaaggcaaagtgggttgggacattctaggcagaaaacag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctgttaacataggtttgaaataaaggcaaagtgggttgggacattctaggcagaaaacag 289
Query: 180 gaaaagtgaaggccaaaaggaagaaacttaatgttttaaaagtttattaagtagtcagga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gaaaagtgaaggccaaaaggaagaaacttaatgttttaaaagtttattaagtagtcagga 229
Query: 240 taagtgcactgctaacaacctaagtagggctggagagatggttcagttgagagaacttgc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 taagtgcactgctaacaacctaagtagggctggagagatggttcagttgagagaacttgc 169
Query: 300 tgctcttgcataggaccctggttctgttcacagcacccacatggtagcttacaaccacct 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 168 tgctcttgcataggaccctggttctgttcacagcacccacgtggtagcttacaaccacct 109
Query: 360 gcaagtccagttccaggggacccaacacaatcatctagataacttctgtggacaccagac 419
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 108 gcaagtccagttccaggggacccaacactatcatctagataacttctgtg-acaccagac 50
Query: 420 accatgtggtacacatacatatatgcaggccaacacaatataaaa 464
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 accatgtggtacacatacatatatgcaggccaacacaatataaaa 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space: 652856
Effective search space used: 652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
