Query= MSMg01no507_j08.b1 MSMg01no507_j08.b1 CHROMAT_FILE:
MSMg01no507_j08.b1 PHD_FILE: MSMg01no507_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:10 2005
(663 letters)
>mm_chr2_171845689_171846751
Length = 1063
Score = 1174 bits (607), Expect = 0.0
Identities = 646/661 (97%), Gaps = 8/661 (1%)
Strand = Plus / Plus
Query: 6 aattctgggaacattttagaggatttgtaaatgctagggctcagaaagggggtttgatgg 65
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 208 aattctgggaacatttcagaggatttgtaaatgctagggctcagaaaggggggttgatgg 267
Query: 66 ctggtggtccttcagggggcctggttgtattttattcatagtcatgctcaaaaaagaagc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctggtggtccttcagggggcctggttgtattttattcatagtcatgctcaaaaaagaagc 327
Query: 126 aagtagaaagaaattagattcaggtgtctctttctctctttctccttctttctctcctat 185
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 328 aagtagaaagaaattagattcaggtgtctct----ctctttctccttctttctctcctat 383
Query: 186 ctagtgataaggggcaaaactggggggggatcaagggcaggaaaaagaagccacaaagta 245
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 384 ctagtgataaggggcaaaactggggggggataaagggcaggaaaaagaagccacaaagta 443
Query: 246 gctaaataccagctacaaacaaagaagaaataagaagaaaggaattagattcagaggtct 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctaaataccagctacaaacaaagaagaaataagaagaaaggaattagattcagaggtct 503
Query: 306 ctctctctctctc-ccct-ctatccttctttctctcctatctagaggtgaaactgggggt 363
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctctctctctctctcccttctatccttctttctctcctatctagaggtgaaactgggggt 563
Query: 364 tggtgggggg-atacagggagggaaaaagaagaacctacaaagtagcaataaccagctac 422
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggtgggggggatacagggagggaaaaagaagaacctacaaagtagcaataaccagctac 623
Query: 423 acatgtgtagcttcagagggtttatgagcaaaaccatgattctgtggaatctttttttaa 482
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aca-gtgtagcttcagagggtttatgagcaaaaccatgattctgtggaatctttttttaa 682
Query: 483 tgctgcacaataacataaagaaatgtattgatggtaggttaatgggaaaggggagataga 542
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgctgtacaataacataaagaaatgtattgatggtaggttaatgggaaaggggagataga 742
Query: 543 acgtggtgcgagctcagatgtgttctttaaagggaaacacactggcaaacaccgatgctt 602
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 acgtggtgcaagctcagatgtgttctttaaagggaaacacactggcaaacaccgatgctt 802
Query: 603 taaaacacactcatgtacacaagtgcacacaagcgcagccacatgtgcacaagtctatgg 662
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 803 taaaacacactcatgtacacaagtgcacacaagcacagccacatgtacacaagtctatgg 862
Query: 663 c 663
|
Sbjct: 863 c 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_j08.g1 MSMg01no507_j08.g1 CHROMAT_FILE:
MSMg01no507_j08.g1 PHD_FILE: MSMg01no507_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:10 2005
(335 letters)
>mm_chr2_172026749_172027483
Length = 735
Score = 443 bits (229), Expect = e-129
Identities = 304/357 (85%), Gaps = 46/357 (12%)
Strand = Plus / Minus
Query: 1 tcacgtaacacctgaggtgaggatttggtcaccatctcacatctcacatcacaagacatc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcacgtaacacctgaggtgaggatttggtcaccatctcacatctcacatcacaagacata 299
Query: 61 cttgagccaaactcccgggctggaggatggcatgttctagaaacccagaggacacaggtc 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 298 cttgagccaaactcccgggctggaggatggcatgttctagaaacccagagcacacaggtc 239
Query: 121 ggcagaggaattttcagagattcaggatgactcttaac---------------------- 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ggcagaggaattttcagagattcaggatgactcttaacgtgtgtgtgtgtgtgtgtgtgt 179
Query: 159 ----------------gtgtgtgtgtgtgtgtttgcatgtgtgtacatgtttga----gt 198
|||||||||||||||||||||||||||||||||||||| ||
Sbjct: 178 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcatgtgtgtacatgtttgagtgtgt 119
Query: 199 gtgtatatgtgcttttgtgtg--tgtttatgtgtatgtgtgtttgtgtatgtgtgtgtat 256
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 118 gtgtatatgtgcttttgtgtgtctgtttatgtgtatgtgtgtttgtgtatatgtgtgtat 59
Query: 257 ttctttgaacctctgtgtgtgcatgtttgtgtgtgtgtgtttgtaggtgtgtgtgca 313
||| |||||||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct: 58 ttccatgaacctctgtgtgtgcatgtt--tgtgtgtgtgtttgcatgtgtgtgtgca 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space: 236676
Effective search space used: 236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
