Query= MSMg01no508_e21.b1 MSMg01no508_e21.b1 CHROMAT_FILE:
MSMg01no508_e21.b1 PHD_FILE: MSMg01no508_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:10 2005
(555 letters)
>mm_chr2_29090657_29091614
Length = 958
Score = 1004 bits (519), Expect = 0.0
Identities = 545/557 (97%), Gaps = 9/557 (1%)
Strand = Plus / Minus
Query: 5 gaattcacatatgctttc--gggcaaagcagaatggagtcttttttttttttcttctaaa 62
|||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 758 gaattcacatatgc---ccagggcaaagcagaatggagtcttttttttttttcttttaaa 702
Query: 63 gacaattttaagttcttggagagattaaccctcatgtagtcactgccttgacaaaactca 122
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 701 gacaattttaagttcttggagagattaaacctcatgtagtcactgccttgacaaaactca 642
Query: 123 cccgcactccctgtggctgctctgttgatggaggaagccagccatgccaggctctgtgtc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 cccgcactccctgtggctgctctgttgatggaggaagccagccatgccaggctctgtgtc 582
Query: 183 cctgcaggcagggcaagtctgaacagggtctagctctccaccctgagccagcagaccatc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cctgcaggcagggcaagtctgaacagggtctagctctccaccctgagccagcagaccatc 522
Query: 243 tcctgggtgtctcagccacatgcacagccctgtgtcatgaggcactctgaagggctgttg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tcctgggtgtctcagccacatgcacagccctgtgtcatgaggcactctgaagggctgttg 462
Query: 303 ggggtgagaaagatgaaaacattgctaaagccaacaaccccaagcaga-ag---gtctta 358
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 461 ggggtgagaaagatgaaaacattgctaaagccaacaaccccaagcagacagacagtctta 402
Query: 359 gggttggcatctcctcagctgctgcttgtgcccacagcccgacctggacacgactctcgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gggttggcatctcctcagctgctgcttgtgcccacagcccgacctggacacgactctcgt 342
Query: 419 gcacacatcgtcataaaagtccctgcttggttgttgagtggctctacataaagccattgc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 341 gcacacatcgtcataaaagtccctgcttggttgttgagtggctctacataaagccgttgc 282
Query: 479 tgggtggtgtcttaaggtgaggcttgctggctcctgctttcctgggcttttactcttgca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgggtggtgtcttaaggtgaggcttgctggctcctgctttcctgggcttttactcttgca 222
Query: 539 catagaaggttctagga 555
|||||||||||||||||
Sbjct: 221 catagaaggttctagga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 958
Length adjustment: 10
Effective length of query: 545
Effective length of database: 948
Effective search space: 516660
Effective search space used: 516660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_e21.g1 MSMg01no508_e21.g1 CHROMAT_FILE:
MSMg01no508_e21.g1 PHD_FILE: MSMg01no508_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:10 2005
(460 letters)
>mm_chr2_28909065_28909925
Length = 861
Score = 861 bits (445), Expect = 0.0
Identities = 457/461 (99%), Gaps = 1/461 (0%)
Strand = Plus / Plus
Query: 1 caactctctgtcccaggtacctgctaagatcaggaatccaagaagtaagcaaaacttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caactctctgtcccaggtacctgctaagatcaggaatccaagaagtaagcaaaacttgtt 260
Query: 61 ccactgtggaaacatctcagaggggccagtgctaaggatgctgcttcatgggttccctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccactgtggaaacatctcagaggggccagtgctaaggatgctgcttcatgggttccctgt 320
Query: 121 atctagcttctgtcctcctgggagcattaattagcccagaaaggtctaacaatataggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctagcttctgtcctcctgggagcattaattagcccagaaaggtctaacaatataggtc 380
Query: 181 tgcctatagtcaaagaacccatcagcatgcccatacctctatggaacctggaaaccgagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctatagtcaaagaacccatcagcatgcccatacctctatggaacctggaaaccgagg 440
Query: 241 tcaatttttagaatctcactgccctctagcggcacaagataaatttgcgccactaaactt 300
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaatttttagaagcacactgccctctagcggcacaagataaatttgcgccactaaactt 500
Query: 301 caactttactttttcggtctcccggcgcctaaagaggcagagccacggccacgtgtaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caactttactttttcggtctcccggcgcctaaagaggcagagccacggccacgtgtaggt 560
Query: 361 tttttt-gggttttgtttttgtttttgtttttcgagacagggtttttctatagccctggc 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttttgggttttgtttttgtttttgtttttcgagacagggtttttctatagccctggc 620
Query: 420 tgtcctggaactcactttgtagaccaggctggtatcgaact 460
||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 tgtcctggagctcactttgtagaccaggctggtatcgaact 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space: 382950
Effective search space used: 382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
