NNTTCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACCTGATGAATACCGAATGGCTGAGAAGCACCTGAAA
AAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACT
GAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTG
ACAGCAGATGCTGGTGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGT
TGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTT
CCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCC
TGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACA
CAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTATA
CAATGGAGTACTACTCAGCTAGTAAAAAAAAAATGAATTTATGAAATTCC
TAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGATAACCCAA
TCACAAAGGAACTCGCACGATATGTACTCACTGATAAGTGGATATTAGCC
CAGAAACTTANGATACCCAAGATATAAGATACAATTTGCTAAAAGCATGA
AATTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGGCCCTTCTT

NNNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGTTGGCACTGGTGAGACG
GTTAAGTAGTTAAGAGCACATACTGCTCTTTCAGAGGACCTGGGTTTGGT
TCTTGACACTCATAACAGGTGGCTCCCAACCACTATAAGCCCAGCTCCAG
GTGGATCTGACACCTCTGGCCGATGATGACAACTGTATTCATGTGCTGCA
ATACCCCACCCCCCTACACAGAATTATAAATGCATCTTTAAAGTTCCAAT
TTTTCTCTGTATAAGGCAAGGAGAGATTAACTCCACTAATTGACCATTCT
AGTAGTTAGGTTCTGTCTTGATTACATGGTCTGGAGAGACTCTGACCATC
TATTTCTACAGAGAGAATTTGCTCTCTATAGTTCCCAATTTTGTTTCACA
CGCCTATGTAAGAGCTCCATCACTAATATATATATATGTATATATATACT
ACAATATGAATATAATCTTTATTCTCAAAATGGCGAAGATAAACTAATAG
GACTTTAAATGGACAGACGTCACAGCGAAGGTGCAATGCTCCAGTGTCCA
CTCACTCATCAAAATAAGGCATTCGAGGACTTTATTCTCTATGGCTGAGT
TGTCAGATCTGTTCCCTTGGACTTTAATCACAATCAAAATAGTCTGTATA
CAATTAAATCATCGATTTCTTGCTAACCTAAATTCCTCTAGATTAGTAGA
TCTTTTTTTGGGG

Query= MSMg01no508_j06.g1 MSMg01no508_j06.g1 CHROMAT_FILE:
MSMg01no508_j06.g1 PHD_FILE: MSMg01no508_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:32 2005
         (600 letters)



>mm_chr2_94209549_94210548
          Length = 1000

 Score = 1116 bits (577), Expect = 0.0
 Identities = 596/605 (98%), Gaps = 7/605 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagttggcactggtgagacggttaagtagttaagagcacatactgctctttcagaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ccagttggcactggtgagacggttaagtagttaagagcacatactgctctttcagaggac 257

                                                                       
Query: 61  ctgggtttggttcttgacactcataacaggtggctcccaaccactataagcccagctcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctgggtttggttcttgacactcataacaggtggctcccaaccactataagcccagctcca 317

                                                                       
Query: 121 ggtggatctgacacctctggccgatgatgacaactgtattcatgtgctgcaatacccca- 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 318 ggtggatctgacacctctggccgatgatgacaactgtattcatgtgctgcaataccccac 377

                                                                       
Query: 180 cccccctacacagaattataaatgcatctttaaagttccaatttttctctgtataaggca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cccccctacacagaattataaatgcatctttaaagttccaatttttctctgtataaggca 437

                                                                       
Query: 240 aggagagattaactccactaattgaccattctagtagttaggttctgtcttgattacatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aggagagattaactccactaattgaccattctagtagttaggttctgtcttgattacatg 497

                                                                       
Query: 300 gtctggagagactctgaccatctatttctacagagagaatttgctctctatagttcccaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtctggagagactctgaccatctatttctacagagagaatttgctctctatagttcccaa 557

                                                                       
Query: 360 ttttgtttcacacgcctatgtaagagctccatcactaatata----tatatatgtatata 415
           |||||||||||||||||||||||||||||||||||||| | |    |||||||  |||||
Sbjct: 558 ttttgtttcacacgcctatgtaagagctccatcactaaaaaaaaaatatatat--atata 615

                                                                       
Query: 416 tatactacaatatgaatataatctttattctcaaaatggcgaagataaactaataggact 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tatactacaatatgaatataatctttattctcaaaatggcgaagataaactaataggact 675

                                                                       
Query: 476 ttaaatggacagacgtcacagcgaaggtgcaatgctccagtgtccactcactcatcaaaa 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttaaatggacagacgtcacagcgaaggtgcaatgctccagtgtccactcactcatcaaaa 735

                                                                       
Query: 536 taaggcattcgaggactttattctctatggctgagttgtcagatctgttcccttggactt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 taaggcattcgaggactttattctctatggctgagttgtcagatctgttcccttggactt 795

                
Query: 596 taatc 600
           |||||
Sbjct: 796 taatc 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)