Query= MSMg01no508_j18.b1 MSMg01no508_j18.b1 CHROMAT_FILE:
MSMg01no508_j18.b1 PHD_FILE: MSMg01no508_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:34 2005
(575 letters)
>mm_chr2_31857366_31858340
Length = 975
Score = 1089 bits (563), Expect = 0.0
Identities = 569/571 (99%)
Strand = Plus / Plus
Query: 5 gaattctttggtttctccttggacacttgctcagcctgcttctctgacccctttctctgt 64
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttggtctgtccttggacacttgctcagcctgcttctctgacccctttctctgt 264
Query: 65 ttttcctaccccactcagctccattaagcaagcccacgtgacttggacattccggtgtat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttcctaccccactcagctccattaagcaagcccacgtgacttggacattccggtgtat 324
Query: 125 ttcctccttatgtcctttgtgcttgctcttgctgcctggaagatgtttacctcagctctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcctccttatgtcctttgtgcttgctcttgctgcctggaagatgtttacctcagctctg 384
Query: 185 ccagcagccttctctcacagcttgttcctgttcaggtctctgagggagaactttgttggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccagcagccttctctcacagcttgttcctgttcaggtctctgagggagaactttgttggc 444
Query: 245 tgttttgagctgctcattcttcagttttacctgttattcgccagtagaaatggtcagtag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttttgagctgctcattcttcagttttacctgttattcgccagtagaaatggtcagtag 504
Query: 305 gtttacttcttactgtcttgtccctgaagaagtttcctgagtaaggatgtcataactggc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtttacttcttactgtcttgtccctgaagaagtttcctgagtaaggatgtcataactggc 564
Query: 365 tcatggttttcaccgtgtagaatgaatgcatcctctacaaattggagacccagtgcacac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcatggttttcaccgtgtagaatgaatgcatcctctacaaattggagacccagtgcacac 624
Query: 425 ggttcagaagagtggtgacccacagtgcatgagtgctccctgtgatggcccaatggggtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggttcagaagagtggtgacccacagtgcatgagtgctccctgtgatggcccaatggggtt 684
Query: 485 gcaactacaaactagagatgaccgtgtggagctcctcctgatgcttttgccttccatttc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcaactacaaactagagatgaccgtgtggagctcctcctgatgcttttgccttccatttc 744
Query: 545 aggccaaggcacttcagcctcctgtcacaga 575
|||||||||||||||||||||||||||||||
Sbjct: 745 aggccaaggcacttcagcctcctgtcacaga 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_j18.g1 MSMg01no508_j18.g1 CHROMAT_FILE:
MSMg01no508_j18.g1 PHD_FILE: MSMg01no508_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:34 2005
(487 letters)
>mm_chr2_31991446_31992332
Length = 887
Score = 706 bits (365), Expect = 0.0
Identities = 439/471 (93%), Gaps = 19/471 (4%)
Strand = Plus / Minus
Query: 1 caggacagccagggctatacagagaaaccctgtcttgaaaaacctnnnaaaaaaaaaaaa 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 462 caggacagccagggctatacagagaaaccctgtcttgaaaaacc----aaaaaaaaaaaa 407
Query: 61 a-aaaaagaagaa-aagaagaagcagcagcagcagcagactgggtcagaagttagggatg 118
| || |||||||| || |||||| |||||||||||||||||||||||| |||||||| ||
Sbjct: 406 agaagaagaagaagaaaaagaagaagcagcagcagcagactgggtcaggagttaggggtg 347
Query: 119 ggggaggcttagaggacagggtcacaaatggcctgagaaaattaaaacatgaaggtatca 178
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 346 ggggaggcttagaggacagggtcacaaacggcctgagaaaattaaaacatgaaggtatca 287
Query: 179 tttcttataaaaaataattttattttatgtgcattgatgtgagggtctcagattccctga 238
|||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 286 tttcttat-aaaaataattttattttatgtgcattgatgtgagggtgtcagatcccctga 228
Query: 239 tactggaggtacagacagttatgaacttcatatggttgctgggaattgaacccaggttct 298
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 227 aactggaggtacagacagttatgaacttcatgtggttgctgggaattgaacccaggtcct 168
Query: 299 tggaagagcagccagtgctcttagccactgaggcatttttttttt--caagacaggagtc 356
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 167 tggaagagcagccagtgctcttagccactgaggcatttttttttttccaagacaggggtt 108
Query: 357 tctctgtatagccctggtgatcctggaactcgctctgttgtagaccaggcaggctagcct 416
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 107 tctctgtatagccctggtgatcctggaactcgctctgttgtagac----caggctagcct 52
Query: 417 taaactcagagatccacctgcctctgcct----a--ctgagtgctgggatt 461
||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 51 taaactcagagatccacctgcctctgcctcctgagtctgagtgctgggatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
