Query= MSMg01no509_c09.b1 MSMg01no509_c09.b1 CHROMAT_FILE:
MSMg01no509_c09.b1 PHD_FILE: MSMg01no509_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:18 2005
(589 letters)
>mm_chr2_20550347_20551332
Length = 986
Score = 1054 bits (545), Expect = 0.0
Identities = 577/589 (97%), Gaps = 3/589 (0%)
Strand = Plus / Plus
Query: 1 atattctataaataaggcctcattgagcctattcacacgcatatttgtaggctatcaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattctataaataaggcctcattgagcctattcacacgcatatttgtaggctatcaacc 260
Query: 61 agaaaactgttagcatttgcttgtgctgtcttgccgttcacggctcattacagagtttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaactgttagcatttgcttgtgctgtcttgccgttcacggctcattacagagtttgg 320
Query: 121 gttgcctgatctggctgatttcatagaaagggctgaggtctggtggcagttagagacctg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgcctgatctggctgatttcatagaaagggctgaggtctggtggcagttagagaccta 380
Query: 181 ttctctgctgtaaatcttgctgagcagaaagctgaagttttagggtagattccaagagtc 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ttctctgctgtaaatcttgctgagcagaaagctgaagttttagggtaggttccaagagtc 440
Query: 241 aggttttatcttatagctggagaatgtggaaaataaaatcttcctttagctaataatatt 300
|||| | | ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 aggtctgaccttatagctggagaatgtggaaaataaaatcttcctttagc---taatatt 497
Query: 301 aaaagcggagggatcttccttaagctattggctgttttccaacagagaatgagcttttaa 360
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 498 aaaagtggagggatcttccttaagctattggctattttccaacagagaatgagcttttaa 557
Query: 361 taacagaaatgtatcttttcattttactcagacctgtacttaaagagggtctgagactgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 taacagaaatgtatcttttcattttactcagacctgtacttaaagagggtctgagactgg 617
Query: 421 ccctgctgtgaaatctccttatttgtacatgttagagtgcaaaggcaaggccgtgctact 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 618 ccctgctgtgaaatctccttatttgtacatgttagagtgcaaaggcaaggctgtgctact 677
Query: 481 catatagcgagaaaatcagtacaactcctctccgccttccatatgtttaatgggagggga 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 678 catatagcgagaaaatcagtacgactcctctccgccttccatatgtttaatgggagggga 737
Query: 541 gtgtcttagcttctaattttaaactgagtttgaagtcgagagctggtac 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gtgtcttagcttctaattttaaactgagtttgaagtcgagagctggtac 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 986
Length adjustment: 10
Effective length of query: 579
Effective length of database: 976
Effective search space: 565104
Effective search space used: 565104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_c09.g1 MSMg01no509_c09.g1 CHROMAT_FILE:
MSMg01no509_c09.g1 PHD_FILE: MSMg01no509_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:18 2005
(572 letters)
>mm_chr2_20696650_20697621
Length = 972
Score = 996 bits (515), Expect = 0.0
Identities = 554/571 (97%), Gaps = 9/571 (1%)
Strand = Plus / Minus
Query: 2 gggccatggagcaaatgccacaggactctgctgtgatatggaggcacagtgactggagct 61
||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 972 gggccgtggagcaaatgccaca-gactctgctgtgttatggaggcacagtgactggagct 914
Query: 62 agatatgcaagacacagagcaatacgtgattaagtagttgtaaaggttgtggatgaggct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 agatatgcaagacacagagcaatacgtgattaagtagttgtaaaggttgtggatgaggct 854
Query: 122 aaggagcctgtgagagaagcgactgatttagctgcttttgggggcaatctgagcatcaga 181
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 853 aaggagcctgtgagagactcgactgatttagctgcttttggggacaatctgagcatcaga 794
Query: 182 atgtttttttaaacttcctgggtgaatgtgttttaccagcaaggacagcgtcatggtctt 241
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 793 atgtttttttaaacttcctgggtgaatgtgttttactagcaaggacagcatcatggtc-- 736
Query: 242 ttt----ggttcatgaaaggagagttgatatcactgtgccatgagctagttagtacacac 297
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 --taaagggttcatgaaaggagagttgatatcactgtgccatgagctagttagtacacac 678
Query: 298 tctcttctctgctacaccctcctgcttacactccacaatgaaacaagctcagacaatcct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctcttctctgctacaccctcctgcttacactccacaatgaaacaagctcagacaatcct 618
Query: 358 ggagcagcatgtctatccaaaatatcaagtattgctgggagggccttcaaattggaattt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggagcagcatgtctatccaaaatatcaagtattgctgggagggccttcaaattggaattt 558
Query: 418 gagaggtaggaagtagaaatcgcccctgagaggccgtgtgacttgtttgggcttatttgg 477
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gagaggtagcaagtagaaatcgcccctgagaggccgtgtgacttgtttgggcttatttgg 498
Query: 478 tagtgtaggctcaatccagcttagagagaggtcattttactatgactcccaagttgttct 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tagtgtaggctcaatccagcttagagagaggtcattttactatgactcccaagttgttct 438
Query: 538 tctatctagacaagagtcttgttccaggcta 568
|||||||||||||||||||||||||||||||
Sbjct: 437 tctatctagacaagagtcttgttccaggcta 407
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
