BAC Information

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BAC

Clone NameMSMg01-509E06
Chromosome2 (Build37)
Map Location 91,862,457 - 91,983,602
singlet/doubletdoublet
Overlap geneCreb3l1
Upstream geneLOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz
Downstream genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509E06.T7 (MSMg01no509_e06.b1)MSMg01-509E06.TJ (MSMg01no509_e06.g1)
ACCAG582984AG582985
length760768
length of high quality
(start - end)		597 (72 - 668)628 (80 - 707)
definitionCHROMAT_FILE: MSMg01no509_e06.b1 PHD_FILE: MSMg01no509_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:27 2005CHROMAT_FILE: MSMg01no509_e06.g1 PHD_FILE: MSMg01no509_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,982,999 - 91,983,602)(91,862,457 - 91,863,083)
sequence
GGGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGN
GNGGAATTCATTCTTTCGACCAGGCTGCCCTTGAACTCAGAGATCCACCT
GCCTCTGCCTCCCAAATGCTGGGATTACAGGCGTGTTCCACCACTGCCCG
GCGACAGGGTCTTTTATTGAGCCTGAGGTTCTGAGATTAGGTGAGGCTAA
TGGCCAGCATGCCTCAGTCTCTAACTCCCCGGTACTGGGATTATAAACAT
ATGCCTTCATTCCTGCCTTCTGACTGGGGCATTGGGTCCTCAGGCATACT
TTACATGGCATACTTTACCATCTGAACTGTCTCCCCAGCCCTCAATTAAG
TTGATTTAAATAACAAGGACTGTGTATACCTATACCCTCCCCCCCAACTT
ATATAATAAGCATATGAATTTCTTTCTTTTTTTTTTTAAACATGAATTCA
TGGAGGGAGGACACTATTTATTTATTTATTTTTGTTTTTTTCCAGACAGG
ATTTCTCTGTATAGCCCTGGCTGTTCTGGAACTCACAATGTAGACCAGGC
TGACCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGAT
AAAAGGCGTGCACCACCACGCCTGGCTCACATATGAATTTCTACCTTACG
TTTGTATAGAAATGTGTATGTACCTATACATAAAGATATACATACATAAA
AGTTTTCTCCTAGGAAGGAACAAGGCTTTTTCTGTACATCTCTAAGCAGA
ACTGGCTTAN

NNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTGCACTGGAGCAAGGC
CAGAAGAGCAGCTACAGAGCAGAGCAGGCTGCAGCGTTCATTGAGAAGAA
AGCCCAGCTCAGTCGGTCCCCAGCTGCACTGTCCCTGGAGCCTGGGCCCC
AACAAACCTCTTTCCCTCTGAGCAGAATCTTTTACCTGCTCCAAGAGGGC
TATGTGGTCCCTCAGAAAGCTGTTGTTTTACTCCTGGGAAGCATCTAGAA
CCATCCTTAGGAAGCACTGGCCTGGTTTCCCTCCATTTTACAGATCAGGC
AGTGGAGGCCTGAGGGGGAAAGAGAGACACGCATGGCCCAGGCTCACAAG
GGAAACAGAGGCAGAATGAGGGTGTTGCCACTTCTCCTAAGACTAAGCAT
CTCTCCTAGTTCCTTCCATCTGATGTAGAAGACTAAGACTTGAACAATCT
CCCTCAGACAGCAAGGCCGGGACATGCTGCTTGAGAATGCCTGGGAGATC
TGTCACTCCATGACTCCCTAACTGATGGAGACACGAAATCAAGCTGAGCA
GGACACTCAAAGACATCTAAGGCCTTTGTCTGCTTAAGTTTTGTTAGAGC
AAGAGGTAGAGACAAACAGGTGGGGAGCCATGTGCTTGGTCTCTGGTGTG
TGTGGGNNTGGAGGGGTTTNCAACTNTGGTTCATTCCATGGTGGGGGTGG
GTTCCCAGAAGATTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_e06.b1 MSMg01no509_e06.b1 CHROMAT_FILE:
MSMg01no509_e06.b1 PHD_FILE: MSMg01no509_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:27 2005
         (597 letters)



>mm_chr2_91982722_91983721
          Length = 1000

 Score = 1069 bits (553), Expect = 0.0
 Identities = 589/605 (97%), Gaps = 9/605 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctgcccttgaactcagagatccacctgcctctgcctcccaaatgctgggattacagg 60
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 881 aggctgctcttgaactcagagatccacctgcctctgcctcccaaatgctgggataacagg 822

                                                                       
Query: 61  cgtgttccaccactgcccggcgacagggtcttttattgagcctgaggttctgagattagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 cgtgttccaccactgcccggcgacagggtcttttattgagcctgaggttctgagattagg 762

                                                                       
Query: 121 tgaggctaatggccagcatgcctcagtctctaactccccggtactgggattataaacata 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 761 tgaggctaatggccagcatgccccagtctctaactccccggtactgggattataaacata 702

                                                                       
Query: 181 tgccttcattcctgccttctgactggggcattgggtcctcaggcatactttacatggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgccttcattcctgccttctgactggggcattgggtcctcaggcatactttacatggcat 642

                                                                       
Query: 241 actttaccatctgaactgtctccccagccctcaattaagttgatttaaataacaaggact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 actttaccatctgaactgtctccccagccctcaattaagttgatttaaataacaaggact 582

                                                                       
Query: 301 gtgtatacctataccctcccccccaacttatataataagcatatgaatttctttc----t 356
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    |
Sbjct: 581 gtgtatacctataccct-ccccccaacttatataataagcatatgaatttctttcttttt 523

                                                                       
Query: 357 ttttttttttaaacatgaattcatggagggaggacac----tatttatttatttattttt 412
           |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 522 ttttttttttaaacatgaattcatggagggaggacactctttatttatttatttattttt 463

                                                                       
Query: 413 gtttttttccagacaggatttctctgtatagccctggctgttctggaactcacaatgtag 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gtttttttccagacaggatttctctgtatagccctggctgttctggaactcacaatgtag 403

                                                                       
Query: 473 accaggctgaccttgaactcagaaatctgcctgcctctgcctcccgagtgctgggataaa 532
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 402 accaggctgaccttgaactcagaaatccgcctgcctctgcctcccgagtgctgggataaa 343

                                                                       
Query: 533 aggcgtgcaccaccacgcctggctcacatatgaatttctaccttacgtttgtatagaaat 592
           |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 342 aggcgtgcaccaccacacctggctcacatatgaatttctaccttacatttgtattgaaat 283

                
Query: 593 gtgta 597
           |||||
Sbjct: 282 gtgta 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 1000
Length adjustment: 10
Effective length of query: 587
Effective length of database: 990
Effective search space:   581130
Effective search space used:   581130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no509_e06.g1 MSMg01no509_e06.g1 CHROMAT_FILE:
MSMg01no509_e06.g1 PHD_FILE: MSMg01no509_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:27 2005
         (628 letters)



>mm_chr2_91862257_91863284
          Length = 1028

 Score = 1135 bits (587), Expect = 0.0
 Identities = 617/627 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcctgcactggagcaaggccagaagagcagctacagagcagagcaggctgcagcgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcctgcactggagcaaggccagaagagcagctacagagcagagcaggctgcagcgttc 260

                                                                       
Query: 61  attgagaagaaagcccagctcagtcggtccccagctgcactgtccctggagcctgggccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgagaagaaagcccagctcagtcggtccccagctgcactgtccctggagcctgggccc 320

                                                                       
Query: 121 caacaaacctctttccctctgagcagaatcttttacctgctccaagagggctatgtggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacaaacctctttccctctgagcagaatcttttacctgctccaagagggctatgtggtc 380

                                                                       
Query: 181 cctcagaaagctgttgttttactcctgggaagcatctagaaccatccttaggaagcactg 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcaggaagctgttgttttactcctgggaagcatctagaaccatccttaggaagcactg 440

                                                                       
Query: 241 gcctggtttccctccattttacagatcaggcagtggaggcctgagggggaaagagagaca 300
           ||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 441 gcccggtttccctccattttacagatcaggtaatggaggcctgagggggaaagagagaca 500

                                                                       
Query: 301 cgcatggcccaggctcacaagggaaacagaggcagaatgagggtgttgccacttctccta 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 cgcatggcccaggctcacaagggaaacagaggcaggatgagggtgttgccacttctccta 560

                                                                       
Query: 361 agactaagcatctctcctagttccttccatctgatgtagaagactaagacttgaacaatc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 agactaagcatctctcctagttccttccatctgatgtagaagactaagacttgaacaacc 620

                                                                       
Query: 421 tccctcagacagcaaggccgggacatgctgcttgagaatgcctgggagatctgtcactcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 tccctcagacagcaaggccgggacatgctgcttgagaatgcctgggagatctgtcacccc 680

                                                                       
Query: 481 atgactccctaactgatggagacacgaaatcaagctgagcaggacactcaaagacatcta 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 681 atgactccctaactgatggagacgcgaaatcaagctgagcaggacactcaatgacatcta 740

                                                                       
Query: 541 aggcctttgtctgcttaagttttgttagagcaagaggtagagacaaacaggtggggagcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggcctttgtctgcttaagttttgttagagcaagaggtagagacaaacaggtggggagcc 800

                                      
Query: 601 atgtgcttggtctctggtgtgtgtggg 627
           ||||| |||||||||||||||||||||
Sbjct: 801 atgtgtttggtctctggtgtgtgtggg 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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