MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-509F15
Chromosome	2 (Build37)
Map Location	147,822,189 - 147,822,464
singlet/doublet	singlet
Overlap gene	LOC100043820
Upstream gene	Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
Downstream gene	Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330
Link	Open Mouse BAC browser

Click to get alignment info.

name	Xrn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24128 MGI:894687
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nkx2-4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228731 MGI:97349
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nkx2-2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18088 MGI:97347
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100043816 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043816
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC668919 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668919
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 8 Proteins pseudo : _no_value

name	LOC668920 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668920
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Pax1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18503 MGI:97485
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC640914 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:640914
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins pseudo : _no_value

name	A530006G24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381384 MGI:2685849
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 3 Proteins

name	LOC100043820 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043820
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Foxa2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15376 MGI:1347476
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC383752 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383752
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Sstr4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20608 MGI:105372
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Thbd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21824 MGI:98736
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd93 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17064 MGI:106664
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nxt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56488 MGI:1929619
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gzf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74533 MGI:1921783
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Napb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17957 MGI:104562
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cstl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228756 MGI:2652834
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Cst11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78240 MGI:1925490
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	8030411F24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78609 MGI:1925859
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cst12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69362 MGI:1916612
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 17 ESTs, 4 Proteins

name	Cst8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13012 MGI:107161
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cst13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69294 MGI:1916544
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cst9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13013 MGI:1340053
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9230104L09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77705 MGI:1924955
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cst3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13010 MGI:102519
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	OTTMUSG00000015744 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:408189 MGI:3651572
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Gm1330 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:383753 MGI:2686176
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Xrn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117606213 GeneID:24128 MGI:894687
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5'-3' exoribonuclease 2 transcript_id : NM_011917.2

name	Nkx2-4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:28202072 GeneID:228731 MGI:97349
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NK2 transcription factor related, locus 4 (Drosophila) transcript_id : NM_023504.1

name	Nkx2-2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117647244 GeneID:18088 MGI:97347
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NK2 transcription factor related, locus 2 (Drosophila) transcript_id : NM_001077632.1

name	Nkx2-2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117647241 GeneID:18088 MGI:97347
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NK2 transcription factor related, locus 2 (Drosophila) transcript_id : NM_010919.2

name	LOC100043816 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250186 GeneID:100043816
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043816 transcript_id : XM_001481082.1

name	Pax1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679208 GeneID:18503 MGI:97485
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : paired box gene 1 transcript_id : NM_008780.1

name	LOC100043820 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250189 GeneID:100043820
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043820 transcript_id : XM_001481084.1

name	Foxa2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753897 GeneID:15376 MGI:1347476
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box A2 transcript_id : NM_010446.1

name	Sstr4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134032000 GeneID:20608 MGI:105372
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : somatostatin receptor 4 transcript_id : NM_009219.3

name	Thbd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365367 GeneID:21824 MGI:98736
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thrombomodulin transcript_id : NM_009378.2

name	Cd93 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922670 GeneID:17064 MGI:106664
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD93 antigen transcript_id : NM_010740.3

name	Nxt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803395 GeneID:56488 MGI:1929619
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NTF2-related export protein 1 transcript_id : NM_019761.5

name	Gzf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802421 GeneID:74533 MGI:1921783
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GDNF-inducible zinc finger protein 1 transcript_id : NM_028986.2

name	Napb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802184 GeneID:17957 MGI:104562
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : N-ethylmaleimide sensitive fusion protein attachment protein beta transcript_id : NM_019632.2

name	Cstl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133891780 GeneID:228756 MGI:2652834
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs product : cystatin-like 1 transcript_id : NM_177655.3

name	Cst11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802553 GeneID:78240 MGI:1925490
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cystatin 11 transcript_id : NM_030059.2

name	8030411F24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367072 GeneID:78609 MGI:1925859
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 8030411F24 gene transcript_id : NM_030135.2

name	Cst12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250191 GeneID:69362 MGI:1916612
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 17 ESTs, 4 Proteins product : cystatin 12 transcript_id : XM_130487.5

name	Cst8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345059 GeneID:13012 MGI:107161
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cystatin 8 (cystatin-related epididymal spermatogenic) transcript_id : NM_009978.2

name	Cst13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892558 GeneID:69294 MGI:1916544
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cystatin 13 transcript_id : NM_027024.3

name	Cst9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753545 GeneID:13013 MGI:1340053
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cystatin 9 transcript_id : NM_009979.1

name	9230104L09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142358158 GeneID:77705 MGI:1924955
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9230104L09 gene transcript_id : NM_029960.2

name	Cst3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803473 GeneID:13010 MGI:102519
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cystatin C transcript_id : NM_009976.3

name	OTTMUSG00000015744 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250192 GeneID:408189 MGI:3651572
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : predicted gene, OTTMUSG00000015744 transcript_id : XM_001481087.1

name	Gm1330 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:63492482 GeneID:383753 MGI:2686176
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : gene model 1330, (NCBI) transcript_id : XM_485073.2

name	Xrn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117606214 GeneID:24128 MGI:894687
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence IC] GO_function : GO:0004534 - 5'-3' exoribonuclease activity [Evidence NAS]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0016049 - cell growth [Evidence IGI]; GO:0006310 - DNA recombination [Evidence NAS]; GO:0006281 - DNA repair [Evidence NAS]; GO:0007017 - microtubule-based process [Evidence TAS]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0016070 - RNA metabolism [Evidence IGI]; GO:0007283 - spermatogenesis [Evidence IEP]; GO:0006350 - transcription [Evidence IEA]; GO:0006353 - transcription termination [Evidence IEA] codon_start : 1 product : 5'-3' exoribonuclease 2 protein_id : NP_036047.2

name	Nkx2-4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28202073 CCDS:CCDS16833.1 GeneID:228731 MGI:97349
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : NK2 transcription factor related, locus 4 protein_id : NP_075993.1

name	Nkx2-2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117647245 GeneID:18088 MGI:97347
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0048468 - cell development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IDA]; GO:0048665 - neuron fate specification [Evidence IGI]; GO:0045597 - positive regulation of cell differentiation [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045595 - regulation of cell differentiation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; Drosophila NK2 transcription factor related, locus 2; homeobox protein Nkx2-2 product : NK2 transcription factor related, locus 2 isoform 2 protein_id : NP_001071100.1

name	Nkx2-2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754860 CCDS:CCDS16834.1 GeneID:18088 MGI:97347
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0048468 - cell development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IDA]; GO:0048665 - neuron fate specification [Evidence IGI]; GO:0045597 - positive regulation of cell differentiation [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045595 - regulation of cell differentiation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; Drosophila NK2 transcription factor related, locus 2; homeobox protein Nkx2-2 product : NK2 transcription factor related, locus 2 isoform 1 protein_id : NP_035049.1

name	LOC100043816 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250187 GeneID:100043816
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481132.1

name	Pax1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679209 CCDS:CCDS16835.1 GeneID:18503 MGI:97485
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence TAS] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence TAS] GO_process : GO:0043367 - CD4-positive, alpha beta T cell differentiation [Evidence IMP]; GO:0043374 - CD8-positive, alpha-beta T cell differentiation [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence TAS]; GO:0007389 - pattern specification [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence TAS]; GO:0001501 - skeletal development [Evidence IMP]; GO:0001756 - somitogenesis [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : wavy tail product : paired box gene 1 protein_id : NP_032806.1

name	LOC100043820 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250190 GeneID:100043820
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481134.1

name	Foxa2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753898 CCDS:CCDS16836.1 GeneID:15376 MGI:1347476
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0048754 - branching morphogenesis of a tube [Evidence IGI]; GO:0030855 - epithelial cell differentiation [Evidence IGI]; GO:0030324 - lung development [Evidence IGI]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : hepatocyte nuclear factor 3 beta (winged helix transcription factor); hepatocyte nuclear factor-3 beta product : forkhead box A2 protein_id : NP_034576.1

name	Sstr4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49169818 GeneID:20608 MGI:105372
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : somatostatin receptor 4 protein_id : NP_033245.2

name	Thbd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678339 CCDS:CCDS16838.1 GeneID:21824 MGI:98736
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence TAS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0007596 - blood coagulation [Evidence TAS]; GO:0009790 - embryonic development [Evidence IMP]; GO:0050819 - negative regulation of coagulation [Evidence TAS]; GO:0007565 - pregnancy [Evidence IMP] codon_start : 1 note : snoRNA MBII-339 product : thrombomodulin protein_id : NP_033404.1

name	Cd93 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754578 CCDS:CCDS16839.1 GeneID:17064 MGI:106664
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA]; GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] [Evidence ISS]; GO:0005529 - sugar binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0016337 - cell-cell adhesion [Evidence ISS]; GO:0006952 - defense response [Evidence IEA]; GO:0042116 - macrophage activation [Evidence ISS]; GO:0006909 - phagocytosis [Evidence ISS] codon_start : 1 note : lymphocyte antigen 68 product : complement component 1, q subcomponent, receptor 1 protein_id : NP_034870.1

name	Nxt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981051 CCDS:CCDS16840.1 GeneID:56488 MGI:1929619
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005643 - nuclear pore [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0008536 - Ran GTPase binding [Evidence IDA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0006611 - protein export from nucleus [Evidence IDA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006405 - RNA export from nucleus [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : NTF2-related export protein 1 protein_id : NP_062735.3

name	Gzf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37674207 CCDS:CCDS16841.1 GeneID:74533 MGI:1921783
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0001658 - ureteric bud branching [Evidence IMP] codon_start : 1 product : zinc finger protein 336 protein_id : NP_083262.1

name	Napb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789104 CCDS:CCDS16842.1 GeneID:17957 MGI:104562
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005478 - intracellular transporter activity [Evidence IEA]; GO:0019905 - syntaxin binding [Evidence IDA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : brain protein I47; brain protein 14; beta-soluble NSF attachment protein product : N-ethylmaleimide sensitive fusion protein attachment protein beta protein_id : NP_062606.1

name	Cstl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244070 CCDS:CCDS16844.1 GeneID:228756 MGI:2652834
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0004869 - cysteine protease inhibitor activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 3 is encoded by transcript variant 3 product : cystatin-like 1 isoform 3 protein_id : NP_808323.1

name	Cst11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037521 CCDS:CCDS16845.1 GeneID:78240 MGI:1925490
definition	GO_function : GO:0004869 - cysteine protease inhibitor activity [Evidence IEA]; GO:0004866 - endopeptidase inhibitor activity [Evidence IEA] codon_start : 1 note : cystatin-related epididymal spermatogenic protein 2; cystatin E1 product : cystatin 11 protein_id : NP_084335.1

name	8030411F24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037529 CCDS:CCDS16846.1 GeneID:78609 MGI:1925859
definition	codon_start : 1 note : cystatin SC; novel protein containing a Cystatin domain product : RIKEN cDNA 8030411F24 protein_id : NP_084411.1

name	Cst12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94367293 GeneID:69362 MGI:1916612
definition	codon_start : 1 product : cystatin-related epididymal spermatogenic protein 3 protein_id : XP_130487.3

name	Cst8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468891 CCDS:CCDS16848.1 GeneID:13012 MGI:107161
definition	GO_function : GO:0004869 - cysteine protease inhibitor activity [Evidence IEA]; GO:0004866 - endopeptidase inhibitor activity [Evidence IEA] codon_start : 1 product : cystatin 8 (cystatin-related epididymal spermatogenic) protein_id : NP_034108.1

name	Cst13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47575695 CCDS:CCDS16849.1 GeneID:69294 MGI:1916544
definition	GO_function : GO:0004869 - cysteine protease inhibitor activity [Evidence IEA]; GO:0004866 - endopeptidase inhibitor activity [Evidence IEA] codon_start : 1 product : cystatin T protein_id : NP_081300.1

name	Cst9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753546 CCDS:CCDS16850.1 GeneID:13013 MGI:1340053
definition	GO_function : GO:0004869 - cysteine protease inhibitor activity [Evidence IEA]; GO:0004866 - endopeptidase inhibitor activity [Evidence IEA] codon_start : 1 product : cystatin 9 protein_id : NP_034109.1

name	9230104L09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037501 CCDS:CCDS16851.1 GeneID:77705 MGI:1924955
definition	GO_function : GO:0004869 - cysteine protease inhibitor activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 note : Cystatin 12; novel protein containing a Cystatin domain product : cystatin E2 protein_id : NP_084236.1

name	Cst3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981822 CCDS:CCDS16852.1 GeneID:13010 MGI:102519
definition	GO_function : GO:0004869 - cysteine protease inhibitor activity [Evidence IEA]; GO:0004866 - endopeptidase inhibitor activity [Evidence IEA] codon_start : 1 note : cystatin 3 product : cystatin C protein_id : NP_034106.2

name	OTTMUSG00000015744 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250193 GeneID:408189 MGI:3651572
definition	codon_start : 1 product : cystatin ap4 protein_id : XP_001481137.1

name	Gm1330 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82887134 GeneID:383753 MGI:2686176
definition	codon_start : 1 product : cystatin ap5 protein_id : XP_485073.3

name	LOC668920 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668920
definition	number : 1 pseudo : _no_value

name	LOC383752 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383752
definition	number : 1 pseudo : _no_value

name	LOC668919 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149250188 GeneID:668919
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 8 Proteins product : similar to ribosomal protein L21 pseudo : _no_value transcript_id : XR_002266.2

name	LOC640914 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149250039 GeneID:640914
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : similar to Hsp90ab1 protein pseudo : _no_value transcript_id : XR_034697.1

name	A530006G24Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149250040 GeneID:381384 MGI:2685849
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 3 Proteins product : RIKEN cDNA A530006G24 gene transcript_id : XR_034699.1

clone name	MSMg01-376N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-211A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339K21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-386N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357G16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-463O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-190E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300C17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-311M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335E20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-152K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167J17
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-509F15.T7 (MSMg01no509_f15.b1)	MSMg01-509F15.TJ (MSMg01no509_f15.g1)
ACC	AG583049	AG583050
length	755	844
length of high quality (start - end)	584 (46 - 629)	272 (77 - 348)
definition	CHROMAT_FILE: MSMg01no509_f15.b1 PHD_FILE: MSMg01no509_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:34 2005	CHROMAT_FILE: MSMg01no509_f15.g1 PHD_FILE: MSMg01no509_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:34 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG AATTCTGTTCTTCCCTATCTTCTTTTAGGTTTGTTGACGGATTACTTTCT TGCTTTTTCTAGGGTGTAGAGTCCGTCCTTGTGTTGGTATTTTCCCTTTA TTATCCTTTGAAGAGATGATTCATAGAAAGATATTGTGTGAATTTGGTTT TATCGTGGAATACTTTGGTTTCTCCATCTATGGCAATTGAGAGTTTTGCT GGGTATAGTAGCCTGGGCTGGCATTTGTGTTCTCTTAGTGTCTGCATGAC ATCTGTCCAGGATCTTCTGGCTGTCATAGTCTCTGGTGAGAAGTCTGGTA TAATTCTAATAGGCCTGCCTTTATATGTTACTTGACCTTTTTCCCTTACT GATTTTAATATTCTATCTTTATTTAGTGCATTTGTTGTTCTGATTATCAT GTGTTGGAAGGAATTTCTTTTCAGGTCAAGTCTATTTGGAGTTCTGTAGA TTTCTTGTATGTGCCCATGTTCTCTATGGAATCTTCTGTACCTGAGATTC TCTCTTCCATCTCTTGGATTCTGTTGCTGATGCTCAAATCTATGGTTCCA GATTTCTTTCCTAGGGTTTCTATCTCCAGCATTGTCTCATTGGTTTCTTT ATTGTTTCTACTTCCCTTTTTAGGTCTTGTATGGTTTTGTTCAATTTTAT CACCTGTTTGGTTGTGTTTTCCTGTATTTCTTTAANGACTTCTACCTCTT TAGCA	CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCCAGGGTGAGACCCAGCCTT CCAGAACCTTCACATTTGCACGGGTGTGTTCTCTCCAGGAAAGCACCGAG CTTGTGCTGAAACTCTGAAGCCCAGTCGTGGTGCAGCTTTGTCCCACTCC TTAGATTGAGATGAGTTTCTCTTTTAGAAAAGTGTTTGAGATTGGCTAAA ACACTGAACTCCCTTTTGTAGCTTGTCTTGTGTGTGTATCAAGCTGGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCT TTTTTTTTTTTCCTTTTTTTTTCTTCCCTTTTCTTCCTTTCTTCTCTTTT TCTTTTTTCTCCCCCCCTTCTCTTCTTCTTCCTTTTTCCTTTTCCTTTTC TTTCCCTTTTCTGTCTTCTTTTCTCTCTTTTTTCTTTTTTTTTTTTCTTT TCCTCTCTTTCCCTCTTTCTCCTTTTCCTCTCTCTTTTTATTTCCCTCTC CTCCTCCCTCTCACTTTTTTTTTTGTCCTTTTTTTTTTCACATTAGTTGT GTACGCTTATAAGCCTTTTGTCTACACAGCTTCTTATTTCGCCCCCCTCA CTTCTTACCTTTTTTCCCTTCACCGATGACTTCTCCTATTATATTTTCTT CTGTTTTACCCCACACATCTACTTACTTTAATTTTATTTGGCGCCGTGTT GTTTTCTTACATCCCATCCCAGCTTTACCCGAGCTTATTGACTTTTATTG TATTCTTCATCTCTTTTTTTACCGCTTCACGTGTACTTTACCAN
quality values	Open. Hide. 8 8 8 8 8 8 8 8 9 19 34 27 27 19 15 16 21 23 18 10 10 10 21 21 41 30 30 29 18 15 7 9 7 11 8 8 9 9 11 11 13 13 21 19 18 19 32 34 39 23 21 17 21 23 25 41 27 27 9 11 11 12 12 19 22 30 30 41 40 40 40 40 40 37 37 37 37 32 32 39 39 39 41 42 50 50 50 50 50 50 53 53 53 50 53 53 53 42 38 38 36 36 50 59 59 59 47 37 37 37 37 32 32 39 44 44 47 59 59 59 59 59 59 50 57 53 53 53 53 53 53 57 57 57 53 53 53 53 57 57 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 48 47 47 50 50 50 57 68 68 57 57 57 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 52 52 52 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 59 59 57 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 44 62 43 43 41 35 20 23 27 44 44 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 68 62 62 62 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 68 59 59 59 68 57 57 57 57 57 57 57 57 59 59 59 57 57 57 57 57 57 59 59 59 57 57 57 59 59 57 57 57 52 52 52 52 52 59 59 59 52 52 52 57 57 57 57 57 54 54 54 57 44 42 32 32 42 43 44 48 48 57 57 54 57 57 57 59 59 59 59 54 54 46 46 43 43 35 42 28 42 30 42 42 57 48 37 37 26 26 26 44 41 48 48 44 44 43 39 39 32 32 35 43 43 48 48 48 48 48 54 54 43 46 43 43 43 39 39 37 37 37 39 39 30 30 17 17 17 25 25 39 39 39 39 39 39 32 37 32 35 35 37 37 36 30 30 22 22 28 34 34 24 24 12 12 12 25 25 34 34 28 28 28 28 28 28 28 30 37 37 32 39 39 32 32 31 32 26 28 17 15 15 13 18 18 28 32 35 37 31 31 24 25 12 14 14 23 18 22 34 28 35 35 37 35 26 22 17 17 17 22 25 24 23 11 11 11 18 12 12 12 22 21 29 37 34 36 23 20 20 36 23 13 13 11 11 11 27 20 30 30 30 24 25 34 34 32 28 28 40 28 31 25 22 22 30 28 28 28 18 18 20 32 28 25 25 25 26 26 28 22 22 30 27 31 34 34 43 59 40 39 36 35 31 31 34 35 31 31 39 39 31 24 24 20 20 20 19 19 34 36 59 43 43 35 35 31 31 31 41 41 37 41 27 19 3 0 3 23 23 32 37 41 41 37 31 31 37 41 31 28 32 20 20 20 18	Open. Hide. 6 6 6 8 13 8 9 9 10 10 12 17 16 22 18 21 9 11 8 6 6 8 6 6 13 8 17 17 9 6 6 6 6 6 6 9 9 9 9 9 9 9 10 12 17 18 18 23 29 32 33 33 33 33 37 23 23 11 9 9 9 9 9 11 15 23 23 36 39 39 33 33 33 36 38 36 50 50 48 37 33 29 32 32 37 40 48 48 50 48 48 57 43 43 36 43 43 59 59 36 41 41 41 41 50 59 57 57 47 47 41 41 47 48 50 51 68 68 57 57 57 57 59 59 57 68 68 57 57 59 59 47 48 46 46 44 47 47 48 68 68 68 68 57 57 57 57 59 59 59 68 68 68 68 68 57 57 57 57 57 57 57 57 52 52 52 57 57 57 57 54 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 57 57 44 44 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 57 57 57 68 57 57 54 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 59 59 59 59 68 68 59 57 57 57 57 57 57 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 59 59 41 41 32 32 34 32 32 41 41 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 47 46 37 37 35 18 17 10 14 10 10 11 22 19 16 13 9 9 9 10 10 17 10 13 9 9 9 8 8 10 8 8 10 12 11 11 9 12 12 13 10 10 10 10 8 8 8 8 8 8 8 8 8 6 8 8 9 13 13 13 10 10 9 12 21 22 17 9 9 9 15 8 10 11 9 12 10 12 10 8 8 8 8 8 8 8 8 8 8 8 8 9 8 15 8 7 7 8 6 6 7 7 6 6 6 6 8 10 10 7 7 10 10 10 8 6 6 8 8 8 13 10 8 8 8 8 8 10 10 10 10 8 10 10 11 14 13 13 10 10 13 12 10 10 11 11 20 20 20 16 16 13 9 7 9 6 6 8 9 12 12 9 9 9 7 6 8 8 10 8 8 10 12 10 12 10 15 8 8 8 8 8 10 12 10 10 8 8 8 8 8 10 8 8 8 8 8 8 8 11 13 15 10 21 18 10 8 6 6 8 6 8 8 8 10 9 10 9 9 9 6 8 6 6 8 10 10 12 14 21 28 11 9 6 6 8 8 11 19 18 18 20 22 24 14 13 8 8 7 7 8 10 8 8 8 8 8 8 8 8 10 10 7 6 8 8 9 9 8 8 8 8 6 6 8 8 7 6 8 8 8 8 8 12 8 8 6 6 6 6 10 10 8 8 10 10 10 10 9 11 11 12 12 12 11 8 10 6 7 10 8 8 10 8 8 8 8 8 8 8 8 10 8 8 6 6 6 6 9 10 10 10 8 8 6 6 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 6 8 10 11 10 10 15 10 10 9 9 9 18 16 11 16 11 11 12 12 10 9 9 9 9 9 10 8 10 9 9 10 10 11 10 10 6 8 6 6 6 6 6 7 7 13 12 15 10 10 9 9 10 7 7 7 7 8 8 8 8 8 8 8 8 9 9 10 9 9 8 8 8 8 8 8 12 12 11 11 11 8 10 6 6 8 8 6 6 6 6 10 8 8 6 6 6 6 8 6 6 13 7 7 7 8 10 8 8 8 10 10 9 10 10 9 8 8 6 6 8 8 8 12 10 8 10 10 10 10 10 9 9 8 8 8 8 8 6 8 13 9 9 10 8 8 8 8 8 8 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no509_f15.g1 MSMg01no509_f15.g1 CHROMAT_FILE:
MSMg01no509_f15.g1 PHD_FILE: MSMg01no509_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:34 2005
         (272 letters)



>mm_chr2_147821989_147822660
          Length = 672

 Score =  460 bits (238), Expect = e-134
 Identities = 265/276 (96%), Gaps = 5/276 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttccagggtgagacccagccttccagaaccttcacatttgcacgggtgtgttctctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctttccagggtgagacccagccttccagaaccttcacatttgcacaggtgtgttctctcc 260

                                                                       
Query: 61  aggaaagcaccgagcttgtgctgaaactctgaagcccagtcgtggtgcagctttgtccca 120
           ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| 
Sbjct: 261 aggaaagcaccgagcttgtgctgaaactctgaaacccagtcatggtgcagctttgtcccg 320

                                                                       
Query: 121 ctccttagattgagatgagtttctcttttagaaaagtgtttgagattggctaaaacactg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ctccttagattgagatgagtttctcttttagaaaagtgattgagattggctaaaacactg 380

                                                                       
Query: 181 aactcccttttgtagcttgtcttgtgtgtgtat--caagctggtgtgtgtgtgtgtgtgt 238
           |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||
Sbjct: 381 aactcccttttgtagcttgtcttgtgtgtgtatatcaagctggtttgtgtgtgtgtgtgt 440

                                               
Query: 239 gtgtgtgtgtgtgtgtgtgtgtgtgtg---tgtgtg 271
           |||||||||||||||||||||||||||   ||||||
Sbjct: 441 gtgtgtgtgtgtgtgtgtgtgtgtgtgagatgtgtg 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information