NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGATCCGC
GGAATTCATTTTCTTTCTTAAACTTTCTTCCTTCCTTCCTTCCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTTTTTCTTT
CTCTCTTTCTTTCTCTCTCTCTTTCTTTTATTACTATTTTGTAATTATAA
TATTTCCCTGTTCTTTCCTTCCCCCACAAACCCTCCCATATATCCCTCCT
TATTCTTTTCCAAATTCCATTCTATTTTCCCATATACATACATACATACA
TACATACATACATACATACATACATACATATTCAAAATGATGGAAGATCA
ATGGGTACAAAGTATGACTCACAACAGCAAGGTCTATGTGAGAGGATTTG
AGAAGGTTCCAGTGCAAGACTAATGAAGAACCTTTATTTTCATGTTCAAA
TTATGCTTTGCTTACTGGCTGGTCATAATGTGCCTTTATCTGCGATACTA
ACACCATTCATGAGTCATAGTTTCCATTTGCTAACTGATGATTATGTTAC
TTATTTCCGGCATCTTAATCTGTAGCCCTAGCTGGCTTAGAAATAAGTAT
GTAGACCAGGTTGGGTTTGAACTAGCCACAGTCTACCTGCTCCCTCCTGT
CAAATGCTGGAATTAAAGGATACAGAACTAAGCTGGGCTGTGCCTC

NAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACGAGTGTCACTTGGTTGA
ATAAATAAATGAATGAAATAATCAAAGATCTCAGGAATAGATAATATTTA
GCTTATTCTTTTTTCTTAAGTATTTTATTTACTTATATTTCAAATGTTGT
TCCCCTTCCCGGACTCTCCTGCACACACACACCCTATTCCCCATCCCCTT
TGCCTATAAGAGGGTGCTCCACAACCCTCCCACCTATTCCTGGTTCACCT
CTGCAGCATCCACCTTCACTGGGGCAACAAGCCTCCACAGGAGCAAGCAC
CTCCCCTCCCAGTGATGCCAGATAAGGCAATCCTCTGCTACATATATAGT
TAAAGCCATGTACCCTTCCATGTATATACTCTTTGGTTGGTAATTTAGTC
CCTGGCAGCTCTGGGGAGTCCAGTTAGTTGATATTGTTGTTCTTCCTACG
GGGTTGCAATCCCCTTCTCCTCCTTCAGTCCTTCCCCTAATTCCTCCACT
AGGGTCCCTGGTCTCAGACCAGTAGTTGGCTGTAAGTATCCCTATCTGTC
TTAGTTAGGTGCTGGCAGAGCCTCTCAGAGGACAGCCTGTCTGTAAGCAC
TTCTGGGCATCAGCAATTGTGTAAGGGTTTGGTGTCTTCAGATGGGATGG
CTCTCAAGGTGGGGCAGTCTCTGGATGGTGTTTTCTTCAGTCTCTGCTCC
ATTTTTGTCTC

Query= MSMg01no509_h03.b1 MSMg01no509_h03.b1 CHROMAT_FILE:
MSMg01no509_h03.b1 PHD_FILE: MSMg01no509_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:41 2005
         (602 letters)



>mm_chr2_114238385_114239386
          Length = 1002

 Score =  971 bits (502), Expect = 0.0
 Identities = 542/560 (96%), Gaps = 10/560 (1%)
 Strand = Plus / Minus

                                                                       
Query: 50  tctttctttctttctttctttctttctttctttctttctttctttctttctttctttctt 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 tctttctttctttctttctttctttctttctttctttctttctttctttctttctttctt 940

                                                                       
Query: 110 tctttctctttttctttctctctttctttctctctctctttcttttattactattttgta 169
           ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 939 tctttctctttctctttctctctctctttctctctctctttcttttattactattttgta 880

                                                                       
Query: 170 attataatatttccctgttctttccttcccccacaaaccctcccatatatccctccttat 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 attataatatttccctgttctttccttcccccacaaaccctcccatatatccctccttat 820

                                                                       
Query: 230 tcttttccaaattccat---tctattttcccat----atacatacatacatacatacata 282
           |||||||||||||||||   ||   ||||||||    |||||||||||||||||||||||
Sbjct: 819 tcttttccaaattccatgcctc---tttcccatatacatacatacatacatacatacata 763

                                                                       
Query: 283 catacatacatacatacatacatattcaaaatgatggaagatcaatgggtacaaagtatg 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 catacatacatacatacatacatattcaaaatgatggaagatcaatgggtacaaagtatg 703

                                                                       
Query: 343 actcacaacagcaaggtctatgtgagaggatttgagaaggttccagtgcaagactaatga 402
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 702 actcagaacagcaaggtctatgtgagaggatttgagaaggttccagtgcaggactaacga 643

                                                                       
Query: 403 agaacctttattttcatgttcaaattatgctttgcttactggctggtcataatgtgcctt 462
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 642 agaacctttattttcatgttcaaattatgctttgcttactgcctggtcataatgtgcctt 583

                                                                       
Query: 463 tatctgcgatactaacaccattcatgagtcatagtttccatttgctaactgatgattatg 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tatctgcgatactaacaccattcatgagtcatagtttccatttgctaactgatgattatg 523

                                                                       
Query: 523 ttacttatttccggcatcttaatctgtagccctagctggcttagaaataagtatgtagac 582
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 522 ttacttatttccggcatcttaatctgcagccctagctggcttagaattaagtatgtagac 463

                               
Query: 583 caggttgggtttgaactagc 602
           ||||||||||||||||||||
Sbjct: 462 caggttgggtttgaactagc 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 116
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)