BAC Information

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BAC

Clone NameMSMg01-509J10
Chromosome2 (Build37)
Map Location 125,839,246 - 125,839,845
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2
Downstream geneFgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509J10.T7 (MSMg01no509_j10.b1)MSMg01-509J10.TJ (MSMg01no509_j10.g1)
ACCAG583229AG583230
length751751
length of high quality
(start - end)
679 (73 - 751)604 (78 - 681)
definitionCHROMAT_FILE: MSMg01no509_j10.b1 PHD_FILE: MSMg01no509_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:52 2005CHROMAT_FILE: MSMg01no509_j10.g1 PHD_FILE: MSMg01no509_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCTATATTTGCGGTCGCTAAACGACTCACAATCGAAATAGGATCCGC
GGAATTCCTTTTTGCCTAATTTTATCCTATATTCCTTTAGCAGAACAATA
GTATTTGGTTTTCCCATAGGCCCATGACCTATGCAGTTTGAGGTTCATAG
CTACCCAGCAACAAAGTCAGTCATGGGTGGCTCGTGGAGAGGGCCTTAAA
TCTAATCAGACAGTGGTTGGTTACTGAAATGGAAACTTATAGTTTCTTGG
AAAGTCAGTTGTGTCGGATGGTGTTTTGCTGGGGCAAACACTTGAAGGAG
TGTTTTCCAAAAGCAAACTTTTTTGAAAGGATGTATCTTTAAGGCAGACT
CATGAAGAAATATTATGCTGAAGCAGACATAGGTGAAAGGATGTTTTGCC
AAAAGCAAGCACATGAAAGAGCATGTGATGAAGAATTCTTCACTAACTAC
ATGCATGAATTGGTTCACTTTACATTGCATTGTTGAGCTCCATTTGCCAT
GACTCCATAGATAGAAATGAACCAAAAACTTCTGGTGATGTGCTAGTGGC
TTCTGGCTGAATCCCCAGACTTGAGTTGATTGGCAAAGTGATGTCAGCTA
ATACAGACTCACGTGCTGAGGCAATGACACAAGGTAAAGCAAGACCCATG
GAGGACACATGATGTTTGGAAGGAGCATAACTAGGACTCAACAGACTATG
AGGGGTCTTGCTTATAGAGCTAGCTGTGCAATGCTTCTTGGTCTCATGTC
T
CTCTATTATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAACACTGGTTAAAATCAGG
CTGCTACGATTGAGCGCTCATCCTGACAGAGGACCTGGTGGCTGAGCTCC
TACTACTCTAGAGGCTCAACCCTAATCGAGGAAATGAAGCACATCCGCAG
TAAAATCTGCAAGATTCTCTAGAACGAGGTGTCACGAGAATCATATGCTG
TAAAAAATGGTTCTTACCGAAAACAGCCTATAGATTCAATGCAATCCTCA
TCGAAATTCTAATGCCATTCTTCACAGAAATTGTTTGGAAGCACAAAACA
CTATGTGTAACCAAAGAATCCTAAGCCAGAAACTACTACTAGAGGTATCA
CCATCACTGATTTAAAGGCATCACGGAGCCAGGTTGACAAAGCTGGCATG
TTACTAGCCTCAAATGGAATAGAAGACGTCTGTTCACCTATAGTTATTTG
ACTGTAAACTAGACAATAAAAAGAAATAAAAAGAGGACGTAACTGCTCCT
AGGTATGGTGAAGGAGGAGGTTTATTGTAGATAGGAGGGAGAATATAGCC
AGAAGCATCTGGAAGGGTCTAGAGTAGACATGACTGAGCCAGACTATGTG
AGTATAGGGGTTGGGAAGAGGAGAGAGTCAAGAGTCAAGAAGCCTGAAGA
AAGTCAGCAGACCACAAGGAAAAAGGGCTGGTATAGCCAAAATGGCTGTG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_j10.g1 MSMg01no509_j10.g1 CHROMAT_FILE:
MSMg01no509_j10.g1 PHD_FILE: MSMg01no509_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:52 2005
         (604 letters)



>mm_chr2_125839046_125840049
          Length = 1004

 Score = 1152 bits (596), Expect = 0.0
 Identities = 599/600 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaacactggttaaaatcaggctgctacgattgagcgctcatcctgacagaggacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaacactggttaaaatcaggctgctacgattgagcgctcatcctgacagaggacctg 260

                                                                       
Query: 61  gtggctgagctcctactactctagaggctcaaccctaatcgaggaaatgaagcacatccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggctgagctcctactactctagaggctcaaccctaatcgaggaaatgaagcacatccg 320

                                                                       
Query: 121 cagtaaaatctgcaagattctctagaacgaggtgtcacgagaatcatatgctgtaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtaaaatctgcaagattctctagaacgaggtgtcacgagaatcatatgctgtaaaaaa 380

                                                                       
Query: 181 tggttcttaccgaaaacagcctatagattcaatgcaatcctcatcgaaattctaatgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggttcttaccgaaaacagcctatagattcaatgcaatcctcatcgaaattctaatgcca 440

                                                                       
Query: 241 ttcttcacagaaattgtttggaagcacaaaacactatgtgtaaccaaagaatcctaagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttcacagaaattgtttggaagcacaaaacactatgtgtaaccaaagaatcctaagcc 500

                                                                       
Query: 301 agaaactactactagaggtatcaccatcactgatttaaaggcatcacggagccaggttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaactactactagaggtatcaccatcactgatttaaaggcatcacggagccaggttga 560

                                                                       
Query: 361 caaagctggcatgttactagcctcaaatggaatagaagacgtctgttcacctatagttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaagctggcatgttactagcctcaaatggaatagaagacgtctgttcacctatagttat 620

                                                                       
Query: 421 ttgactgtaaactagacaataaaaagaaataaaaagaggacgtaactgctcctaggtatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgactgtaaactagacaataaaaagaaataaaaagaggacgtaactgctcctaggtatg 680

                                                                       
Query: 481 gtgaaggaggaggtttattgtagataggagggagaatatagccagaagcatctggaaggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgaaggaggaggtttattgtagataggagggagaatatagccagaagcatctggaaggg 740

                                                                       
Query: 541 tctagagtagacatgactgagccagactatgtgagtataggggttgggaagaggagagag 600
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctagagtagacatgaatgagccagactatgtgagtataggggttgggaagaggagagag 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)