Query= MSMg01no509_j13.b1 MSMg01no509_j13.b1 CHROMAT_FILE:
MSMg01no509_j13.b1 PHD_FILE: MSMg01no509_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:52 2005
(652 letters)
>mm_chr2_134696289_134697340
Length = 1052
Score = 1093 bits (565), Expect = 0.0
Identities = 633/659 (96%), Gaps = 7/659 (1%)
Strand = Plus / Plus
Query: 1 aaaggcaattcactatagtgactgagacgatggaaaaagaaaccataaataagtgagaat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 194 aaaggcaattcactatagtgactgagacgatggaaaaagaaaccataaataaatgagaat 253
Query: 61 tttgtgcatctcatcccaaaaagcttagattggcatccttctctagaaagtgcttgccat 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tttgtgcatctcatcccgaaaagcttagattggcatccttctctagaaagtgcttgccat 313
Query: 121 ggggatgtcaaccttgtagtgtgggatgctgcgttcagttccctttataattcaatcaac 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 314 ggggatgtcaaccttgtagtgtgggatgctgagttcagttccctttataattcaatcaac 373
Query: 181 ctgttgattagttcaatggatggaagagtgactgccaactaccagatcacctggtatgtg 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 374 ctgttgattagttcaatggatggaagagtgactaccaactaccagatcacctggtatatg 433
Query: 241 atctttgtggcaggcattggttcactatcaccaggtatttaccagataccaccttagaga 300
| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agccttgtggaaggcattggttcactatcaccaggtatttaccagataccaccttagaga 493
Query: 301 tagccctatggaaacagatataactccatggtcttgaagatggacagaccatttaacggg 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tatccctatggaaacagatataactccatggtcttgaagatggacagaccatttaacggg 553
Query: 361 aggaaggagaactagcaccctaggatagtgcaggaggatacacagagtgacagggtgaca 420
|||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 554 aggaaggagaaccaacaccctagggtagtgcaggaggatacacagagtgacagggtgaca 613
Query: 421 cattcaggaggcaggaggaggcagaatggtgaggagaataatagaacaaaactgttgagt 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 614 cattcaggaggcaggaggaggcagaatggtgaggaaaataatagaacaaaactgttgagt 673
Query: 481 ctttgtgtcaacttaaatatcttgcaatgcttatgtgaggggg---ta----caagatac 533
||||||||||||| |||| |||||||||||||||||||||||| || ||||||||
Sbjct: 674 ctttgtgtcaactgaaatgtcttgcaatgcttatgtgagggggacatataaccaagatac 733
Query: 534 aacctttttaagcaggtgcttagctgagctgattcttttttcctttctttaaaaaatgta 593
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 734 aacctttttaagcaggtgcttagctgagcagattcttttttcctttctttaaaaaatgta 793
Query: 594 acctgaagctaggtcagtaattttttatagagcaagaaaatacagttagaaagtggaca 652
||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 794 acctgaagctaggacagtaactttttatagagaaagaaaatacagttagaaagtggaca 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_j13.g1 MSMg01no509_j13.g1 CHROMAT_FILE:
MSMg01no509_j13.g1 PHD_FILE: MSMg01no509_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:52 2005
(619 letters)
>mm_chr2_134827114_134828133
Length = 1020
Score = 963 bits (498), Expect = 0.0
Identities = 525/534 (98%), Gaps = 1/534 (0%)
Strand = Plus / Minus
Query: 1 tcaacaggaacactgtaaaagtaaatgcatatcaatgaagagactggagtaaaagacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tcaacaggaacactgtaaaagtaaatgcatatcaatgaagagactggagtaaaagacatt 675
Query: 61 tgacaaggttctagatcttggaatatttctaagaatttacttgaaagaatttagtactaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgacaaggttctagatcttggaatatttctaagaatttacttgaaagaatttagtactaa 615
Query: 121 tgtggcagtaacatatcaagaaaacattacagagcacactcaatctttcatgactttcca 180
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 614 tgtggcagttacatatcaagaaaacattacagaacaaactcaatctttcatgactttcca 555
Query: 181 tattaaataaactagagtaacatttcccctttaaaaggggaaaataataagggctcttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tattaaataaactagagtaacatttcccctttaaaaggggaaaataataagggctcttgt 495
Query: 241 -tcacttcttcaacatttcaaatgctctacagtgtacttcagataaattatttgactgaa 299
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cacacttccacaatatttcaaatgctctacagtgtacttcagataaattatttgactgaa 435
Query: 300 gcacaatcatttcaaatcataaaattttgcacagctgacctgaaacctaaatattaaatc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gcacaatcatttcaaatcataaaattttgcacagctgacctgaaacctaaatattaaatc 375
Query: 360 tagtttgttgtgatataatttattctttaaaaacaattgcctatcaaccactaactcaca 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 374 tagtttgttgtgatataatttattctttaaaaataattgcctatcaaccactaactcaca 315
Query: 420 tgaaaaatatattcaatcattgacttttattttgatattgtgagcactattcttttccaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgaaaaatatattcaatcattgacttttattttgatattgtgagcactattcttttccaa 255
Query: 480 aagtgtatgtggaaagtttatttcaagcattgttactttaaaaatatgtaaaca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagtgtatgtggaaagtttatttcaagcattgttactttaaaaatatgtaaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space: 615090
Effective search space used: 615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
