BAC Information

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BAC

Clone NameMSMg01-509M23
Chromosome2 (Build37)
Map Location 108,759,832 - 108,760,368
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423
Downstream geneLOC623031, Mett5d1, Kif18a, Bdnf, LOC100043427, Lin7c, Lgr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509M23.T7 (MSMg01no509_m23.b1)MSMg01-509M23.TJ (MSMg01no509_m23.g1)
ACCAG583398AG583399
length788813
length of high quality
(start - end)
617 (78 - 694)589 (75 - 663)
definitionCHROMAT_FILE: MSMg01no509_m23.b1 PHD_FILE: MSMg01no509_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:10 2005CHROMAT_FILE: MSMg01no509_m23.g1 PHD_FILE: MSMg01no509_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTAACATCCGCGGAA
TCAGTATATTCTACTTCAAAAAAGCCGCCAATTAGATTCACTTAGAAGTC
ATTACATCCCTTAGGATTTTGATTTAATTTCTTTAGGCCAAGACCCAGGA
CTGGGTCATGACAACGATTCCTCAGTAGATTCTTCATGTGCAGTTGGGGG
TCTAGTATCATTAATTTGATTGAACTCATTCTTAGAAGAAAAAGCCCAGG
CATAATTTGCCCGTTGGTCTTGCAGGTTAAAAATGTTGAAGAAAATTAAA
GTAGAAAAAATAATCATTCCTTATTTTTTGCAGACATATAATTAAAATTT
TAAAATAGCAAAGCCAAAAGGTGACATTCATGTCCAAGATGAACCTAAAT
ACGTAGTTTTTATTTTCACCAAAAGATTTGACTTATTTGTGGCATCATGT
CAAGATAGAGAAGCTTGGAGGTTTTGAAACTGGTCCTAGGATTAGAAATT
TGAAAGGATTTGTGGAGAATTACGAAACAAAAACACTGTCTAAATTTAGC
AAAAGTAATTTCCCAATGAGTTATTGCTCAATATTATCTTTACATATTAA
ATCTTAGCCTCCCTAAAAGAGAAATAGAAGGGCTTTATGGATTTTTTCTA
ATATATAGGACAGTCTCTGAATATACACACAAGCAGAACAACTCAGACTG
GCCTTAAAAGGAGAAGCAGGTCATCTGTTTTTTATCAGCAAGGGAAGTAA
CGACTGGAGAAAGGAAGATGTTAGCAAGGCAAAGCATA
CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTATCTCTGAGCCCCAAGACA
ACATTTTCAACAAATGGTGCTGGCCCAACTGGTGGTTATCATGTAGAAGA
ATGCGAATTGATCCATTCCCATATCCTTGTACTAAGGTCAAATCTAAATG
GATCAAGGAATTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA
AAGTAGGGAAAAGCCTCGAAGATATGGGTACAGGGGAAAAATTCCTGAAT
AGAACAGCAATGGCTTGTGCTGTAATATTGAGAATCGGCAAATGGGACCT
CATAAAATTCAAAGCTTCTGTAAGGAAAAGGACACCATCAGTAAGATAAA
AAGGCCACGAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATA
GGGGACTAATATTCAATATATATAAAGAACCCAAGAAGGTGGACTCCAGA
AAATCAATTTTTGTTTTTTTATTAGATATTTTCTTCATTTACATTTCAAA
TGCTATCCCTAAAGCCTCCATTAAAAATGAAAGAGAAAATGAAATTGAGA
GACATGAGGTGGCTGTGAATATGGGAGGGTTAGTGAGAGGAATTGCAATG
AACATAGTAAAAATATATTGTGTGAAAATATCAAGGAATTATTTAAATTT
TGTTTATAGATTTTTGAAGAGCTCATTAATATCTGNTAAATTTGATACTA
ACCCCTGATAAATTTTAGTAGCACATTTTAAGGGGGGAAATGTGTTCAGT
AATACATGGCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_m23.b1 MSMg01no509_m23.b1 CHROMAT_FILE:
MSMg01no509_m23.b1 PHD_FILE: MSMg01no509_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:10 2005
         (617 letters)



>mm_chr2_108759352_108760368
          Length = 1017

 Score = 1007 bits (521), Expect = 0.0
 Identities = 533/537 (99%)
 Strand = Plus / Minus

                                                                        
Query: 81   atgacaacgattcctcagtagattcttcatgtgcagttgggggtctagtatcattaattt 140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 atgacaacgattcctcagtagattcttcatgtgcagttgggggtctagtatcattaattt 958

                                                                        
Query: 141  gattgaactcattcttagaagaaaaagcccaggcataatttgcccgttggtcttgcaggt 200
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957  gattgatctcattcttagaagaaaaagcccaggcataatttgcccgttggtcttgcaggt 898

                                                                        
Query: 201  taaaaatgttgaagaaaattaaagtagaaaaaataatcattccttattttttgcagacat 260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897  taaaaatgttgaagaaaattaaagtagaaaaaataatcattccttattttttgcagacat 838

                                                                        
Query: 261  ataattaaaattttaaaatagcaaagccaaaaggtgacattcatgtccaagatgaaccta 320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837  ataattaaaattttaaaatagcaaagccaaaaggtgacattcatgtccaagatgaaccta 778

                                                                        
Query: 321  aatacgtagtttttattttcaccaaaagatttgacttatttgtggcatcatgtcaagata 380
            ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 777  aatacgtagtttttatttttatcaaaagatttgacttatttgtggcatcatgtcaagata 718

                                                                        
Query: 381  gagaagcttggaggttttgaaactggtcctaggattagaaatttgaaaggatttgtggag 440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717  gagaagcttggaggttttgaaactggtcctaggattagaaatttgaaaggatttgtggag 658

                                                                        
Query: 441  aattacgaaacaaaaacactgtctaaatttagcaaaagtaatttcccaatgagttattgc 500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657  aattacgaaacaaaaacactgtctaaatttagcaaaagtaatttcccaatgagttattgc 598

                                                                        
Query: 501  tcaatattatctttacatattaaatcttagcctccctaaaagagaaatagaagggcttta 560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597  tcaatattatctttacatattaaatcttagcctccctaaaagagaaatagaagggcttta 538

                                                                     
Query: 561  tggattttttctaatatataggacagtctctgaatatacacacaagcagaacaactc 617
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 537  tggattttttctaatatataggacagtctctgaatatacacacaggcagaacaactc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)